LOC118936780 (LOC106610496)


Basic Information

Item Value
gene id LOC118936780
gene name LOC106610496
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78294588 ~ 78331698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034237.1
CTCTGAATGAACGCCTCTCTGAGGAAGATGCAGGCGGGGCCCACGATGTTGTGTAGAACGGTGCAGTTCTGGACCACAGCACACAACGGCTCCTCAAACACTCTTCTCctttcatcttcctcctcttcttcctccaggGCCCCCACACCCCCCGGCATTGCCGCCGCAGCCAATGGGGCTCCGCTCCCCTCCGAGGGCAATACCCCCTTAGGGAGGGGAACCAATCAAATCGGTTAACCAACCACATGCCAACCAATCAGAATGATCAGAAAAGGTGTGTTCAGCCAATAAAAATGGCAGATGTTTTGGGTTCTTGGCCAGCTGTTCTTTCTGTGTGGATCTACCCAGCAGGACTTGGGTTCCAACAGAAGATAAAGGCATTGCTTGGATTTAAACAGCCAGCGTAGTAATACAGTTTAAATACTGCTTAAAGCAGGGGTTACATGAGACTCCTGctttagaacatttagaatgcaaTGTCAAGGAACGTTTAGAATGTCTAggaacatttagaatgtctaGGAACAGCTAGAATGTCTAGGAACAGTTAGAATGTCTAGGAACCGTTAGAATGTCTAGGAACAGTTAGAATGTCTAGGAACAGTTAGAATGTCAAGGAACGTTTAGAATGTCTAggaacatttagaatgtctaGGAACAGCTAGAATGTCTAGGAACAGTTAGAATGTCTAGGAACCGTTAGAATGTCTAGGAACAGTTAGAATGTCTAGGAACAGTTAGAATGTCTAggaacatttagaatgtctaGGAACAGTTAGAATGTCTAGGAACAGTTAGAATGTCAAAGAACAGTTAGAATGTCTAGGAATAGTTAGAATGTCTAGGAACAGTTAGAATGTCTAGGAACAGTTAGAATGTCTaggaacatttagaatgtttaggaACCGTTAGAATGTCTAGGAACAGTTAGAATGTCTAGGAATAGTTAGAATGTCTAGGAACAGTTAGAATGTCAAGCAACAGTTAGAAGCCAACATTGTCTCGTTTTGCCGTGGATGATTGGGAAGAAGATTCTGGCACAAATGAGACAGATGGTATCAGCATTATGAGAAATGGATGAAGAATATGAGGGTGAAAATGTCACAGTGAATTATGATGTAATAGTTGTATTATGAAAAACGATGATGTACTTCATATCTTCATGATCAAATAAGCCCTGAAATTGCTGCTGGAATATGTTCAAGTTGTACATTATGATCATTTGAGAAATGGTCCATTTTTTTCCTCATAAATGTAATTTGCGTAAG
>TU1054720
ACAACAACATACTGAGGACTGGTCCATAACATCTAACAGAGGAGGTTTTGTTGTTTACTAGTCTCTTAAAGTCATGTCATCACGGTCTTCTGGCCAGGAGAGTCAGCGAGACATCATCCTGACAAACTCCTCAAAGTCGAGCAAGCCGTCCCCGTTGAGGTCGACATCTCGGAGGATCTCGTCGATCTCTGGTTGGTTGAGCTGCTCCCCCACCAGCTTTTTCATGGCCTCCTTCAGTTCAGCCAGGCTTATCTGACCATCCCCGTTAGAGTCAAATTCTTTGAAAGCATCCCTGAGCTCCTTCACTCCTATCATGTCTGCTGTCTCTGCCAACATTTTAGGACCCATCAGCTCCACAAAGTCCTCAAAGTCCACTCTGCCGCCACagaTGTTCTGGCTGAGTTCGATGAGCTCCATCTCTGTGGGCATGTACCCCATAGTCCTCATGCACTCTCCCAGTTCCTTACAGCTGATGTAGCCATCTTTATCCTTATCAAACTCCCCGAACGCCTCCTTCAGCTCTTCAATCTCTTCTGGCCGTAGGTCTCTGTCCTGCAGGGTTTCAGATTGGAggggacacacacagagtgacagacaCAGTGTGTTAGCTCGcacggacacagacacacacacaacgataAGGACCCTGAATATACTGTAGTGTAGATgaacagaaatacacacacacacaatggctgACAGAGAAACATCCTCATAAAAACCAAGAGAACTGCACATCTTTGATTTAGCTCCATCTGAATGTTGCGGACTGAACTGGACAGGAAGTAAAGCATTTCATATGGACTCATTTCATATGGACTCATTAGATAGGGAATCATTTGATATGGACTCATTAGATATGGACTCATTTGATAGGGAATCATTTGATAGGGAATCATTTGATATGGACTCATTAGATATGGACTCATTAGATATGGACACATTAGATATGGACTCATTAGATAGGGAATCATTTCATATGGACTCATTAGATAGGGAATCATTTCATATGGACTCAGAAGATAGGGAATCATTTCATATGGACTCATTAGATAGGGAATCATTTCATATGGACTCATTAGATAGGGAATCATTTCATATGGACTCATTAGATATGGACTCATTAGATATGGACTCATTAGATAAGGAATCATTAGATA
>TU1054723
ACAACAACATACTGAGGACTGGTCCATAACATCTAACAGAGGAGGTTTTGTTGTTTACTAGTCTCTTAAAGTCATGTCATCACGGTCTTCTGGCCAGGAGAGTCAGCGAGACATCATCCTGACAAACTCCTCAAAGTCGAGCAAGCCGTCCCCGTTGAGGTCGACATCTCGGAGGATCTCGTCGATCTCTGGTTGGTTGAGCTGCTCCCCCACCAGCTTTTTCATGGCCTCCTTCAGTTCAGCCAGGCTTATCTGACCATCCCCGTTAGAGTCAAATTCTTTGAAAGCATCCCTGAGCTCCTTCACTCCTATCATGTCTGCTGTCTCTGCCAACATTTTAGGACCCATCAGCTCCACAAAGTCCTCAAAGTCCACTCTGCCGCCACCTAGATGGAAACAAGAGTCATTACAGAAATGGTCACAGGGGTGATGAAGAGCTTCAAATACTATACACAGAGGgGCCCCCACACCCCCCGGCATTGCCGCCGCAGCCAATGGGGCTCCGCTCCCCTCCGAGGGCAATACCCCCTTAGGGAGGGGAACC
>TU1054724
ACAACAACATACTGAGGACTGGTCCATAACATCTAACAGAGGAGGTTTTGTTGTTTACTAGTCTCTTAAAGTCATGTCATCACGGTCTTCTGGCCAGGAGAGTCAGCGAGACATCATCCTGACAAACTCCTCAAAGTCGAGCAAGCCGTCCCCGTTGAGGTCGACATCTCGGAGGATCTCGTCGATCTCTGGTTGGTTGAGCTGCTCCCCCACCAGCTTTTTCATGGCCTCCTTCAGTTCAGCCAGGCTTATCTGACCATCCCCGTTAGAGTCAAACTGGAGAAGAagaaggacgaggaggaggaggaggacaggaggaagtaaAGTgagGACCCATCAGCTCCACAAAGTCCTCAAAGTCCACTCTGCCGCCACagaTGTTCTGGCTGAGTTCGATGAGCTCCATCTCTGTGGGCATGTACCCCATAGTCCTCATGCACTCTCCCAGTTCCTTACAGCTGATGTAGCCATCTTTATCCTTATCAAACTCCCCGAACGCCTCCTTCAGCTCTTCAATCTCTTCTGGCCGTAGGTCTCTGTCCTGTCCGAAGACGGAGGCGATGATGGGTTTGAGCCTCCTCCTCTCGGGGGTCTTGAGCCCCCAGGTCTCCTCTGGTGCCTCTGTAGCGGTGGACAGACTTCTGGTCTTAGTCTTCTTAGAAGGCCTCTTTATGCTGCAGGAGCTCCATCTCCTCAACTTCTCTATCTTCTTCTTGATGGagcccTTTTTCTCCAACCTTCCTTCAGGGATGTCTTCCAGGGGTAAGATGCTTCCGGCTTCACTCATCCTTCTAAACAAACTAACACAAATATCAGGCTAACTTCCTCTATCACTCATATACGGTTTCTCTGACTGGTTCTGTCACTCTCACTCGCGTTTGTTTGTTCActctatgtctttctgtctcatcTGTCAcgctctctgtcacactctcgTTCTTCTATTCACTCCATCTATATCTCTCACTGTACATCTGCCACTGTTGATCATCTGTGGAGCATCTCTCACATCTCTGTcacctgtccctccctccatccctccactc

Function

NR:

description
PREDICTED: calcium-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034237.1 False 1268 mRNA 0.41 2 78313213 78317604
TU1054720 False 1160 lncRNA 0.44 5 78294588 78301627
TU1054723 False 544 lncRNA 0.52 4 78294588 78313434
TU1054724 True 1046 lncRNA 0.50 7 78294588 78331698

Neighbor

gene id symbol gene type direction distance location
LOC110497212 LOC106610528 coding upstream 23380 78265470 ~ 78289833 (+)
LOC110518385 LOC106597144 coding upstream 66875 78215387 ~ 78247524 (+)
LOC118936774 LOC106610528 coding upstream 138051 78147469 ~ 78175162 (+)
LOC110518069 LOC106610529 coding upstream 171707 78118510 ~ 78141506 (+)
LOC110497220 NA coding upstream 242888 78067320 ~ 78070325 (+)
LOC118936781 LOC106610525 coding downstream 38157 78355761 ~ 78384072 (+)
LOC118966656 LOC106610525 coding downstream 71419 78389023 ~ 78432765 (+)
LOC118936487 LOC106602251 coding downstream 128141 78445745 ~ 78452257 (+)
LOC110497230 LOC106610523 coding downstream 136406 78454010 ~ 78463872 (+)
LOC110497234 LOC106610520 coding downstream 158359 78475963 ~ 78482853 (+)
G926903 NA non-coding upstream 14923 78295820 ~ 78298290 (+)
G926871 NA non-coding upstream 103982 78208432 ~ 78209231 (+)
G926867 NA non-coding upstream 115487 78184125 ~ 78197726 (+)
G926847 NA non-coding upstream 264798 78043606 ~ 78048415 (+)
G926922 NA non-coding downstream 18159 78335763 ~ 78336007 (+)
G926942 NA non-coding downstream 84775 78402379 ~ 78417821 (+)
G926910 NA non-coding downstream 118052 78435656 ~ 78436322 (+)
G926948 NA non-coding downstream 119339 78436943 ~ 78437210 (+)
G926949 NA non-coding downstream 119670 78437274 ~ 78439114 (+)
LOC110510687 LOC106591138 other upstream 588160 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 859298 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1017204 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1428971 76869703 ~ 76884980 (+)
G924927 NA other upstream 2753614 75557460 ~ 75562892 (+)
LOC110497229 LOC106602251 other downstream 202428 78519650 ~ 78533161 (+)
G927061 LOC106602167 other downstream 458331 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 734887 79023569 ~ 79065796 (+)
G927584 NA other downstream 882677 79200281 ~ 79202981 (+)
G927606 NA other downstream 963782 79281386 ~ 79284144 (+)
G926846 NA non-coding upstream 251111 78043214 ~ 78043477 (+)

Expression


Co-expression Network