LOC118936781 (LOC106610525)


Basic Information

Item Value
gene id LOC118936781
gene name LOC106610525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78355761 ~ 78384072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934064.1
TGGTATGTGTGATAGAGGgggtgtggtctgtgtgtgtggatggggatgggtagAGATTGAAGGGATTAGAGGAAGTAAAAGCGCGAAAAACAAGACTGATGATGTCAACAGTGCTGTGCATGTCCTTCTTGGCCCTAGTCCTATCAGGAGGAGCCTGGGCGTTTTCTCCCATTGGGGACGGAGCCTCCACCCATGTCAGCATCACAGAAAAAGCTGTGCTACAGAAGGTCACAGAGGTGTGCCGAGCCATTGCAGAGTCAGAGGGACGAGACTTCACCCCCacgGGCAATTCTGCAGAGGAGCTGGTCCAGGCCTGCCTGGGACCCAAAGCAACAGGTGAAGTGTCAGCAGCTAAGTTCAAATCTGCCCTGAATGAGATCTACATACAGAACGGACAGGTGGACAGAGACTTTGTCAACAGCCCAGCCCATCATTTTAACTCAGAGGCGTTTGCTCTGGGCCGGCGCCTTATAACTGATGGGGTGGCCAGCATCAAGGCCAACGTACAAAAGGAGAACTTCCAGGCTGccagagagacactggggagagtactgcacacactacagGACTTCTACAGCCACAGTAACTGGGTGGATCTGGGATACACTGAACCCTACGCCAACCTGATCCGCCCCGATCTCCCACTGGAAAACCTGGCAGATGTTAAAACCCCGACCTGCAGTGACTGTGCCAATGGGGGGTTCTGTTCCAACTCCATTCTGCCTAACATCCTTAATGAGAAGAAACTCACCTCTGGGTACATGGGGATCTTCTCCGCAGCTAAGCctaaagGTAAGTGTAGTCATGGCGGTGCAGCTGACCTGACCAGCTCCAAGGCTCCTCGCGGGGGCATCAGCAAGGATGAGCGTCGCTCTGACAACGTGGCCCTGCACACCGCTGCTGTCACCGTGGCAACAACCGCAACCCTCCAGCTGCTGGACGACATCCGGGGAGCCGCCGGTGACAACAACTACCTACGcttcATGGGCATAGCGCGTTCGTCAGTGGTTGTTTTTGTGATCGACACCACGGGGAGCATGAGTGATGACATCCTTGAAGCCAAGAGAGTCGTCTATAAGATCATCGACAGCAAGAAGGGAACGCAGGATGAGCCCTCCCTGTACATCCTGGTCCCATTCAATGACCCAAagttCGGACCCCTGATAAAAACGACAAACCCGAATGTTATGAAAGCAGAGATCGCTAACCTCACGGCTGAAGGAGGTGGAGACCTCCCTGAGATGTGCCTATCAGGTCTCCAGttggcgCTGACCGGTGCCCCTGCGTCGTCCAACATCTATGTTTTCACAGATGCCGTTGCTAAGGACATTGAATTAAAGGAAACGATCGTGGCCCTGATCAGGAGCACCAAGTCAACCGTGTCTTTCTTCATGACTAATGATGGTGCTGGTGCTAGAAGGAGGAGGCGTGGAGTAGAGTCCAGGGCAGCTACATTCGAGACCTACAAGGACCTGGCGCTGGCGTCTGGTGGTCAGGCCATTGGAGTCACCAAGGAAAATCTGCCCCAGGCCACTGACGTCATCATCGACTCCTCCACCTCCGCTCTGgtgATAGTCCTACAGCGAGCGAGGAACCCAGGCAGAGCTGAGACATTCTCCTTCCTGCTGGACGAGTCTCTGAACAACATCACCATCTACATCACTGGAAATACCATCACCTTCACCCTGAAGAACCCTGCAGGTGTGACCCAGAAACAGAACGAGGCCAACGGGGAACTGGGGACTGTCCAGACGGTGGGCAACCTCTACCGGGTCCGTCTGGCCTCCAACAAACAGACAGGATTATGGGAAATCAGCATGAACTCCAACCAGCCCTACACACTGAAGGTCACGGGTCAGAGTACCATTGCCTTCATTTATGACTTTGTGGAGACTTTCGATGGACCTCATCCAGGATACGCCCTCATCTCTGGCCGTCCACAAGCAGgcaTGCCTGCCATGCTGTTGGTATCAGTGTTGGGCAGAAAGGGCCCAGCCTCTGTCAAGGTGGCTGACATTGCCTTGGTGACAGTGTCAGGGTCAGAGGTCGTAGGCGGGGCCCTGGAAGACATGGGCAACGGGAAGTTCCTAGTTACGGTAACCAAGGTCCCTGCAGGGGAGTTTGTGGTGCTGTTGAACGGGACAGACGTGGTCTCCTCCACCGTGTTCCAGAGACAGTCCACCACTCAGATGTCTGTCTCCAAGGTTACCATCAAGGCCGTGGTGGACAGAAGCATGGAGCCTGGTAAACCCTTCACCCTTCCCTTCACCGTCATGACCGACGCCACTGGAGGCAGCTACACAATCAGTGCCAGAAACGACCGAGACTTCAAAATGAACGTCCCTGGCAGCATCGCTGTGACCACCGGAGGAAACGCCACCGGTGAACTGACCATCACGGTGCCCGCCAACACCCCCTCAGGAACAGACGTCACCCTGACCATCGAGGCTGTGGCCCCCGGGGCGTCCGACTCCAACTACGCCGTCCTGCGCCTCTCTGTCGTCACCAAGgTGACAGATTTCACCCCTCCCCAGTGTGAGATGGTTATCACCTCGTCGGTCGACTGCCCAGCTGACCCAGCAGCTTGCAGCTCCGCCTTCTGGCAGCTCTCTGCCAACCTGACCGACGGTGTCAATGGCACGGGCATCACCAGCCTCAAACACCGCCAGGGAGTGGGCAGCCTCACCCACACGGACCTGAACCAGACAGTCGTTGCAGCAGAGTTCAACGCTTCGTGCTGCTCTCTGACAGTGGAGCTGGTGGCGGTGGACAAAGCCATGAATGTCGGCACCTGCCGGTTTTCCATCGTCCGCAACGCGGGACCGCCCTCCATGGCTCTGTCCCTCCCACTGTTGGTGTGTCTGCTGGTCTCTGCCCTCTTCACTACGTCCTTCACTGACTTACTAATCTGATTTTAACCTcatggactgactgactgccaaCCCGATACTACCTCTTAAACTTAAAGAAGAAACATTTCTCAACCAAATGTCTATGTTtgatgtaaatggcatgttatagaagggtTCAGAATACCTGTTTTGTGATTTCACCTGTTTTTCAGAACTTATCCCAAATAGCAAATGACTTCCTCATCCTCGTTGTGTAGTATGAGGCTCTGAAAAAACATGAAGaaaggctccaaaaacacccaGATTCGTCCTTTTAGAAACGGCAAAGatctcagtatagtgatgcaggtctttagatgttgtacacgtGAAATTGTGCCTTTCAGAACTTTATCCACAATATTATATTCCTTTTCTGCGCCACTCGAGACGATTCCCCTCCTATATCGGGCGCTTTGCCTTAACTTTCTGAAGATCAACAACGCTTTATCCAGTCGACAGGAGGGGATTTTGTCTTTTTTTAAACTTTCTTTATTTCATCAAACGAtgatgattttttaaattttttatataAATGATGATTGCCGAATAATGTTGACGGTATACGGGGCATGTGATGTTATCACTTAACTATAAAGCTCCCCTCTCCATGCGATTCTAAATGCCTACTGCTTGCTAAAGCTATTTCTCAACTATAAACACAATGTTTCTTTGCAGGATCCTTGTCCTGACTTTCCAGAATGCCTGAATTGCTTCGCATTGATTTTCTGATTGGCTGGATACAAGTTTCAacatccaattatttcagatctacTAGAGTGCAAGTTTCACTGTGGCACCGTGGCGATACGTTGGCACATGATGATCATTATTAGAATATGACAAATATCAGTCAAGTCTTGCGTTCTATTCTTGCTGGCTTTTGCCTGAGACGTGAAACAGAGAGGTTGGAGGGCAGACAGACTATCACCAATGTATTAATTGCCAATTTGCCTAAATGggtaatggaaacacttcaaccaCAACGTTTTTATATAGGTTTTCTATAGGTGTGATGTCAATACGTCCATCTGTTTTTATCGACACAAGACAGTTCAGTGGAAACGCGCCGTAGCAGGTCACTTTCTAAATGTCTACAAAACATCACCGGGCAAGTTAATGGAAACATAGCTAGTGATGGCACAATTGGGCATCAggttacagtatgatatgataaGGAAAGATAATATGTCTATTAACACCTATCCAGGTGTTGTTACATCTGGCAGGCATCTGCAAAGTTTTCATCTGGGAACGTACCCAAGGCCACCATGAAAATGAATGTTTCTCGTGTAGAAAAGAGCCAGCAGCTTTTCTCAAGGCAATTTCTCAACATGTTACTTGCACTGTAATAGTGATGTTTTAATGTTTGTCTCCAGTTTACCTCTCTGGCGTGAATAAAAAGCTCTGCTGTCCTGCTGCA

Function

NR:

description
PREDICTED: von Willebrand factor A domain-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934064.1 True 4314 mRNA 0.51 18 78355761 78384072

Neighbor

gene id symbol gene type direction distance location
LOC118936780 LOC106610496 coding upstream 38157 78294588 ~ 78331698 (+)
LOC110497212 LOC106610528 coding upstream 65928 78265470 ~ 78289833 (+)
LOC110518385 LOC106597144 coding upstream 109423 78215387 ~ 78247524 (+)
LOC118936774 LOC106610528 coding upstream 180599 78147469 ~ 78175162 (+)
LOC110518069 LOC106610529 coding upstream 214255 78118510 ~ 78141506 (+)
LOC118966656 LOC106610525 coding downstream 4951 78389023 ~ 78432765 (+)
LOC118936487 LOC106602251 coding downstream 61673 78445745 ~ 78452257 (+)
LOC110497230 LOC106610523 coding downstream 69938 78454010 ~ 78463872 (+)
LOC110497234 LOC106610520 coding downstream 91891 78475963 ~ 78482853 (+)
LOC110497227 LOC106610465 coding downstream 111279 78495351 ~ 78501627 (+)
G926922 NA non-coding upstream 19754 78335763 ~ 78336007 (+)
G926903 NA non-coding upstream 57471 78295820 ~ 78298290 (+)
G926871 NA non-coding upstream 146530 78208432 ~ 78209231 (+)
G926942 NA non-coding downstream 18307 78402379 ~ 78417821 (+)
G926910 NA non-coding downstream 51584 78435656 ~ 78436322 (+)
G926948 NA non-coding downstream 52871 78436943 ~ 78437210 (+)
G926949 NA non-coding downstream 53202 78437274 ~ 78439114 (+)
LOC110510687 LOC106591138 other upstream 630708 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 901846 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1059752 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1471519 76869703 ~ 76884980 (+)
G924927 NA other upstream 2796162 75557460 ~ 75562892 (+)
LOC110497229 LOC106602251 other downstream 135960 78519650 ~ 78533161 (+)
G927061 LOC106602167 other downstream 391863 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 668419 79023569 ~ 79065796 (+)
G927584 NA other downstream 816209 79200281 ~ 79202981 (+)
G927606 NA other downstream 897314 79281386 ~ 79284144 (+)

Expression


Co-expression Network