LOC110497227 (LOC106610465)


Basic Information

Item Value
gene id LOC110497227
gene name LOC106610465
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78495351 ~ 78501627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573227.2
TCAAAGTTGGTGAAGATGAATGTTCTGAATGGATAACAGTAGTGTCGAACTGGAACAGAAAGGAAATGGTCTAAAATTGGAGTGGAGGACACGTGTGTGGATGATATTGAATCGCTTCTTGTTGGGATGCGTTTGTTAAGTAAGGATGTATATGTGGGAGACCCGTTTGAGGTGTAACAAATTGTGAAGTAGGCCAAGAGTGGTCTTATTATGATTATCTGTATTTatgaagaacagaggaagattgCAGTGGGCCTCAAATGAATCCGGGCAACATACATTTTGTGCTTTAAACTTCGGGTGACGACAGATGTTCAGGTTGAATACCTGAAGAGAATTCCTGGTGTGGTTGGTGCCCAGCGTCTGACCCGCTGGGTGAATGGAGAAAACAAAGAAAGTCTGTCGGTACTGTTGAACTATGCACATACCTATGCATGTGAAGCTTGATTATGTAAGATGTGCTGTAAGAGCTTTCATCCCCAAACCACTGCAGTCTAAGAATTGTAAAGGATTTGGCCATGTTTCAACGGTGTGTAGAAGGATGGTGTTGCAATTGTGGTAGGGATCATGATCCTGAGTGCCCTGCATACAGGgtgaaggagattgaggttgcAAAAGTTATCAATCTCCTATGAGGAGGTAATTAAAATACTTGAGTTGATGCTCCTGGAGATATGATAGTGGAAGCACCACAGCCTGTAGTAAATGTGTGCTGCTAGTCAAAAGATGCTGTGTGTGTAAAAAAGGTGGATTTTGTGGCGTTCATTGCCACAGTTATAAACTGTGCTGCTCAAATCTCAACGAAGTCTAAGAAACTGGACATTACTGTGGCTGCTGCAGAAACGTTTGTTGGACTTAACGATTTTACCTCTATTATATTTTTTATGTTTGGCAGTTTGTTACACTTTTGGGGAATTATGTTTCCATcccgcacagtaggtggcgggaTACAGATTAAATTGTACATTCGCCAATATACCATAGAAGAAGATTATttatatgcgtgtgtgtgggttGAAGATGGCCGCCGCTAACATGGCGAAAGAAGGTTTTGAAACCCAGTTCGCCTCTGTTATGGAGAAGGTGCTGAAGACGGCAGTCATGGAGACAACGCAACTTTTCGAAACAACTATTGAGGAGCTGCGATTCGAAATATGCAGAATAAAAGAAGAGAACGAGGACCTCAAATCGAGGCTTCGATCCcctgaaaatgtgaagaaatcgaCGGGTGAAAGTGAAAGACAAACCGCAGAGCCTGGACCGAGTCAAAGAACATCACGTATCGGCAAACGTGACATTGGTGTCCAATGTGTTCTGACAGTGCAAGCTTTGCCACTGTCTGTGGAACAGCACCTGCGCGAGGAGGACCTGCACCGTGGGGCCTACGACAAGGAGGACAACCCACAGATGGCCTTTGTACTGATCAAACAGGAGGTGGACTGGgaGGCAGACTATTCTGATGACTACTCCCCCGGGTACATACTGCTAAAGCAGGAGGGGGGAGAGCCCCCGACTCTGGTCCGCAGACAACCTCTCAGAGAGTTACCAGGCAGAGccCTGGTCCCACCTGGAGCcgtcagggccctggtcaaccGTTACACCCAGGAAAGGCCTCCTATCACCCAGCCTACCTCAGCAGAGGCCCCCCTCCAGGGAGAACCAGACACCCAGGAGACCCCCCAGGctctcagcccatcccagccCAGGACCAGAGAGTTTACCAGTGGCAGTGCAGGCCAGGCCCCTGGAGCAGAACAGCAGTCACTTGTAATACCAACAGCAGAGTCTCCAACATTACACCAGACAGCATCTCCTCAATCAGCAGCCACTATCCAGTCTACAACAActgtcctgtctactgtaatgGCGCAGTCCACGGTAACTACTCTGTCAAAAGAAACTGTCCAAACGACCGCAGCGGTCCAGTCGACTGTAGCGGTGAAGTCGACAGCAGCATCGTCAGATCGCCCGCCACCTGTCATCTCCGGGTTACCCAGAACCCCTCTTCAGAATACACAGCCCAGCCCCGTACCCCCTCGTCCATCCCCATCTCCTCGACCATCACCAGCACAGTCCCACACAGACATTCTACCTGTAGCTCGTCCAATAGCAGTGCCCTCAACACAACCAGCTAGGCCTACAGCTGTACCTGATGGACCACCGGCCGCACCACCAACACAACCGCTACCGCCTACAGTTTTGGAGAAGTCGGATGTTGCCACGGCAACTCCGCCAACACCGGTCCAGTCCGCTCAGTTGCTAACTTTGTCTGAAGAACTTGCCGGCCCCTCTGAGAAGCAGGTGTCCTTGGTCACTGAGCATGTGCAACCGTCCCCCACTCTGCCATCACCGAAGTCCCCTGTTGTCCCAGAGAGGACGTTTGATGAAGCCCCTGTACAGCTGTCAGCCCCTGCTGTAACCACACCCTTTGGCCCCTGTCAGATGTTTATGACACAGTTTTCAGCTCAGTTGTCAGTAGCACCCTTAGTACGCTCCCTACCGAGGgtggaggaaaaagaggaggaggaggaagatgagggggAGAGGCTTTCCCCCCTCTCTGCCACGTCTATGGAAGCTGTGATGACCAGGTCTGTTGCTACGGAAACGACCCCCGTCGGTGAGAAAAAGGAGGAGATTGTTGTCCATTTAGGCGGCAAGCGAAAGTCAAGTCGACGTGAAACGCTCCTCTCCGGTCTCCGCCTCCGCTTAAGGCCCCGCCCCCAGGACAGCACGCCATCTCCAGTGGTTGCTAAGAAACCCAGAAGAGAGAGAACCGCCCCTCTAGACCATGACTACTCAAAGGTGATGGAGGACGGAGAAGAAAAGTCCAGGGAATCACACGTTGACCAGGATGTAGTAGAGGACACAGCTAACGGTGAGACGGCTGACGACAAGTCTAGTGGACAAGGAAGTAGTAACCACATCATcagtgaggaagagggaggagctAACACTGATGTGACCTCTCTGACCAGACAATCACCTATTGGTGGAGGTGTTGGTGTGTCCAAATCCAAGAAGAGAAGCATGACCTGGGTGCAGGCTCAGAGAGGTTTGGCCCTAGCCCAGGCTAAGAGGAGTAGGTCGAAGGTCACTAAGACCTCACagcaaggtcagaggtcagagctTAGAGGTCTGGTCACACAGACATCGTTTCTGCCTTCCACCCCACAGCGCCGCCGGTCGTACAGCCCCAGCCCTCATGCTGCGTCTACCTCAAGCCTCAGCCCACGCCGCACCAGCCCGCGTTGCACCAGCCCTCACGGTACCCCCAGCCCACACCAGGCTACGGGGGCGAATGTGAACCCTTCTCCTACCACCCCTCCTCACCCACAGCCTCACCAGTTCAAGGTAATTTCTGCCACCCCTCGTCGCGGCAGACCTCGCTCGGCGGCCGCGGCGTTATTGAATTTGAAAcgttctccctccacccctcaaccTATCCCCTTCATTGTCACCGTCAGCCCTCACTCCGGATTTAAAAAGTCCCCCCCATGCACGCTGACATTCCAGCAGGCGCAGCGGTATCGCAAGTCACAACCGATGTGGTCGCCGCCAGGACCGTTCCAGCTCCAACAGTCTCCCAAGTCTCCACGGAAACGTTTTACCAAGAACCAGTGTGCAGACTGCGGTCGTGTCCTGAGCAGCGCCGCTGCTTTAGAGAGTCACGCCTCCCTCCACACAGGGAAGCGCCCGTTCGCCTGCTCTGCCTGCGGCAAGGACTTCCCCAACCTCAAGGGCCTCAACCGCCACGCCCGCGTCCACGGTGAACAGCGGGGCCACCAGTGTCCGAAGTGCGACAAGACCTTTGTCTACCGCTTCGGCCTGACCAAGCACGAGCAAATGGTTCACAGCGGCGTGCGGCCGTTTATCTGCCCGATCTGTGACAAACGCTTCGTCATTCGGCGCGACATGGAGACGCATCTCCGcgttcacactggagagaaaccatttGCCTGCTCCCTCTGTGTGAAGCGGTTCAAGAGGCGTGTGGAGCTGAATGTTCACCTGAGGTGGCACAACGGGGAGAAGAGACACTGGTGCTCGTACTGCGGGAAGGGCTTTCTGGATTACAATAATCTGAAGAGGCACAAATTTGTCCACACTGGGGAGAAACCTTACACCTGCTCTGAGTGTGGCAAGCACTTCAAACAGACTGGCCATCTGAAGAAACACCTGAAGACAATACACAAAGACAGATAGAGAGGACAGGGGACGAGCctttaatggcaccctattccctatatagtgcactactttggactagAAAtatagcactatatagggaatagggtgtcagatGGTGATGAGGGAATAGTTCTGTTTGCTGTGAATTTGCTTTTGTTTGGAAGAATCATGCTGCGAGAGAATGTAGCAAAATGTTAAAGAAAAATGTTGAATTTGAATTGAGTTGATTAATTTAATTAAAACTAATTCTggttgtcatttgtttttcattctATTTATTAGGAAAGTTAGAATCCTAAAACCAAATTGAAATTTAGGTGTACTGTGTTAGTCACACAaaatgcttttaaaaaaaaatgttctgcAGGTTTGAAGTTGTTGCTTTAAAATGTGTTTATTCCGTTTTATTTGTACTTAAATCTGGTCTGGTAAAGGAAGTTTCACTTGAACAACCGTCGAAGTCGTAATGTTTCTTGTGGAGGGGGTTGTTACATTTCACCACTGACCTTTACatttcctccaaaacatgacaACAAATCCATTTGACAATTACACACTTATTAATGCGGATAATGTCGCTAGTTTTATCATATAGCCAATGTTAAGCAAACAAGCTAATTGTATTATTAGTAAAGTTAGCTAGCAATCAAGCTAGCTAAAATCTTATTGGTTGAAGAATTGGTCAGACTTGAATATGGGGCATTCATGTGCTTGTGGGAAGTTGTAAGTCTGCCATGATCGTGTTTAAGTGCTTTTGAAATGTTTGGTAGGTTGGTATGATCATTATGACAGACGATTCCTCGACGTCTAATCTAAGGCAGGGTTTCCCCAAACTTTTCCCTCTCAGCCTTAAGTGTCCCGCTTGCAACGCCTCATTCGGTAACTGTTGAGGTGGCGCAATCGAATAAGACGCTTGAGGAGGGTGGTCACGTGTGTTTGAGAGTTCAAAACCGGTATGGGCCGAATCAGGAGGATGTGGTACTCGCTTAGCAAGCAGCGTGACGTCCTTTACACTatggcaaaaaacaaaacgtggggacagagtttgggaaatccTGATATAAAAGGCATACATTCTTATTCAAAACATGGTTAGGTTTCCAACAGATTATATTTTCAATGTCCTTATTAATAAACAATTGatcatacttttttttttctcaatgtcAAATAAAAATCGAGACCAAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106610465

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573227.2 True 5380 mRNA 0.49 4 78495351 78501627

Neighbor

gene id symbol gene type direction distance location
LOC110497234 LOC106610520 coding upstream 12498 78475963 ~ 78482853 (+)
LOC110497230 LOC106610523 coding upstream 31479 78454010 ~ 78463872 (+)
LOC118936487 LOC106602251 coding upstream 43094 78445745 ~ 78452257 (+)
LOC118966656 LOC106610525 coding upstream 62586 78389023 ~ 78432765 (+)
LOC118936781 LOC106610525 coding upstream 111279 78355761 ~ 78384072 (+)
LOC110497229 LOC106602251 coding downstream 18023 78519650 ~ 78533161 (+)
LOC110497242 LOC106610480 coding downstream 33497 78535124 ~ 78538309 (+)
LOC118966657 LOC106602244 coding downstream 132533 78634160 ~ 78643493 (+)
LOC110534505 NA coding downstream 222431 78724058 ~ 78727002 (+)
LOC110497250 LOC106602246 coding downstream 225372 78726999 ~ 78730160 (+)
G926949 NA non-coding upstream 56237 78437274 ~ 78439114 (+)
G926948 NA non-coding upstream 58141 78436943 ~ 78437210 (+)
G926910 NA non-coding upstream 59029 78435656 ~ 78436322 (+)
G926942 NA non-coding upstream 77530 78402379 ~ 78417821 (+)
G926950 NA non-coding downstream 31807 78533434 ~ 78533944 (+)
G926979 NA non-coding downstream 32842 78534469 ~ 78534910 (+)
G926982 NA non-coding downstream 40304 78541931 ~ 78542255 (+)
G926954 LOC106610479 non-coding downstream 54364 78555991 ~ 78558069 (+)
LOC110510687 LOC106591138 other upstream 770298 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1041436 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1199342 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1611109 76869703 ~ 76884980 (+)
G924927 NA other upstream 2935752 75557460 ~ 75562892 (+)
G927061 LOC106602167 other downstream 274308 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 550864 79023569 ~ 79065796 (+)
G927584 NA other downstream 698654 79200281 ~ 79202981 (+)
G927606 NA other downstream 779759 79281386 ~ 79284144 (+)

Expression


Co-expression Network