LOC110497238 (LOC106610518)


Basic Information

Item Value
gene id LOC110497238
gene name LOC106610518
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78505862 ~ 78510097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934073.1
ACGTTTTTTGGGGGTGGATGCTTATTGTGTTGACTGGCTAGCAAAGTAAGTGCCGAGCCAACTACCATAGCCTTGCTTTCTCTCAATACCTctggtatttgtatttattcgAATAGCCTcatatactgtaaatacataTACAGATATATATCTTATATCtcgaaattatatattttttaaaaatgcattAGGTAGAGACCACAACATCCAACAGTAACGTTTGCTAGCATGCTAACACAGACAAAAGTGGTTTAGTTACCTGTATCTTTGCAGCTAATTTGAGCGATTTTTCCTTTTGAAATACGGAATCGTAACACTGACCAACCTGAACAAAAGTAGCTAAAAGTTACTATCTCTTAGCTGTAGCTTGCTGCTCATAGACACTTTGCCATGATGTCCGCAGCCATTATAACCTTCCAGTCGCAGCTCTCCGGGGTCATGGAGACGGTCCTTAAGTCAGCCATATACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAGGAGGTGTTCCGGAACCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGTcgcaaggagagggacagagagggaggccaGAGGGGGAAGTGTGGAGACTGTGGGAGAGCTGGCAAGGAAGGTCATGAGATAAGATTAGGAATTTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGAGCAGCTGTGGGGGTGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGAGGCTGATGGTTCAGACGTCTCTGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACATCAGTGCCAAGATGAGTGGAGATCCAGTCTAGACCAGAGGCCTGAACCACCAGGCCCCGAGGGAGACTCTGGGGACCCCACCGACCCTCTCTACCGCCCCCACTACAGCATGGAGGAACTAGGGGGTGACTTTGATAAGTCTGGTTACTGCAGTGGCGGTAGTGGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGCGCTGAGCTACGGAGCTGTGGGTCACTACCAAGTGAACCTGGGGGTGTTTAAGGGGGGCGACCATCGCTCCCACATGCCTGGCCCCCATCGGATCCGGAGGGAGCAGGTGGAGTCGCCAACGCCATCTCCCCACCCGGAGGTGGGAGACCTGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCTGAACACGGTGTCCCAGAGTTGGGTAACAGAGCCAGCCACCGAGCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccCGTATGATGCCGCTGACGATTTTGGACACTCTCTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGAGCTTCCCAGACGCTGGTTCCCTCAAGGACCACAAGCAGACACACAAAACGGGGAGAGGGTTGAGTTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCACTGCTCCAAGGGCTTCACCTCCTTCTCCGACTTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTTAAGCTGCATCAGCGCAgtcacacacaggagaaacctcACCGCTGCACTATGTGTGACAAGAGCTTCACGCGGGTGGACATTTTGAAAGTACACCAGCGCACACACACTGGGGAGAGACCgtactgctgtgctgtgtgtgGACTCTGCTTCAAACGACTGGCCCATCTAAAGTTACACCAGCACAAACACAGGGCAGATTTCCTGGCCTGAGCGGTGGTCTAGAACAGTGATTTCAACACTGTGAGGCATGGGTTCCTCCAATttcttttaaatatatatatatacttacagtccattcaaaagtttgcacacacctactcattcaaggattcttctatatttttacaattttctacattgtagagtaatagtgaagaca
>XM_036934074.1
CCAACGTAGAATGTCCCACTACCCGACCCGTTAGTTTGTTTCCGGAAGTACGTTTTTTGGGGGTGGATGCTTATTGTGTTGACTGGCTAGCAAACCATTATAACCTTCCAGTCGCAGCTCTCCGGGGTCATGGAGACGGTCCTTAAGTCAGCCATATACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAGGAGGTGTTCCGGAACCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGTcgcaaggagagggacagagagggaggccaGAGGGGGAAGTGTGGAGACTGTGGGAGAGCTGGCAAGGAAGGTCATGAGATAAGATTAGGAATTTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGAGCAGCTGTGGGGGTGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGAGGCTGATGGTTCAGACGTCTCTGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACATCAGTGCCAAGATGAGTGGAGATCCAGTCTAGACCAGAGGCCTGAACCACCAGGCCCCGAGGGAGACTCTGGGGACCCCACCGACCCTCTCTACCGCCCCCACTACAGCATGGAGGAACTAGGGGGTGACTTTGATAAGTCTGGTTACTGCAGTGGCGGTAGTGGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGCGCTGAGCTACGGAGCTGTGGGTCACTACCAAGTGAACCTGGGGGTGTTTAAGGGGGGCGACCATCGCTCCCACATGCCTGGCCCCCATCGGATCCGGAGGGAGCAGGTGGAGTCGCCAACGCCATCTCCCCACCCGGAGGTGGGAGACCTGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCTGAACACGGTGTCCCAGAGTTGGGTAACAGAGCCAGCCACCGAGCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccCGTATGATGCCGCTGACGATTTTGGACACTCTCTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGAGCTTCCCAGACGCTGGTTCCCTCAAGGACCACAAGCAGACACACAAAACGGGGAGAGGGTTGAGTTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCACTGCTCCAAGGGCTTCACCTCCTTCTCCGACTTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTTAAGCTGCATCAGCGCAgtcacacacaggagaaacctcACCGCTGCACTATGTGTGACAAGAGCTTCACGCGGGTGGACATTTTGAAAGTACACCAGCGCACACACACTGGGGAGAGACCgtactgctgtgctgtgtgtgGACTCTGCTTCAAACGACTGGCCCATCTAAAGTTACACCAGCACAAACACAGGGCAGATTTCCTGGCCTGAGCGGTGGTCTAGAACAGTGATTTCAACACTGTGAGGCATGGGTTCCTCCAATttcttttaaatatatatatatacttacagtccattcaaaagtttgcacacacctactcattcaaggattcttctatatttttacaattttctacattgtagagtaatagtgaagaca
>TU1055345
CTcatatactgtaaatacataTACAGATATATATCTTATATCtcgaaattatatattttttaaaaatgcattAGGTAGAGACCACAACATCCAACAGTAACGTTTGCTAGCATGCTAACACAGACAAAAGTGGTTTAGTTACCTGTATCTTTGCAGCTAATTTGAGCGATTTTTCCTTTTGAAATACGGAATCGTAACACTGACCAACCTGAACAAAAGTAGCTAAAAGTTACTATCTCTTAGCTGTAGCTTGCTGCTCATAGACACTTTGCCATGATGTCCGCAGCCATTATAACCTTCCAGTCGCAGCTCTCCGGGGTCATGGAGACGGTCCTTAAGTCAGCCATATACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAGGAGGTGTTCCGGAACCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGTcgcaaggagagggacagagagggaggccaGAGGGGGAAGTGTGGAGACTGTGGGAGAGCTGGCAAGGAAGGTCATGAGATAAGATTAGGAATTTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGAGCAGCTGTGGGGGTGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGAGGCTGATGGTTCAGACGTCTCTGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACATCAGTGCCAAGATGAGTGGAGATCCAGTCTAGACCAGAGGCCTGAACCACCAGGCCCCGAGGGAGACTCTGGGGACCCCACCGACCCTCTCTACCGCC

Function

NR:

description
zinc finger protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934073.1 False 2278 mRNA 0.52 4 78505862 78510048
XM_036934074.1 False 1969 mRNA 0.55 5 78505862 78510097
TU1055345 True 946 TUCP 0.51 4 78507077 78509931

Neighbor

gene id symbol gene type direction distance location
LOC110497224 LOC106610522 coding downstream 31694 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 coding downstream 60236 78440760 ~ 78445626 (-)
LOC110498612 LOC106610501 coding downstream 63694 78441659 ~ 78442168 (-)
LOC118936782 LOC106610527 coding downstream 151388 78339023 ~ 78354474 (-)
LOC110498425 LOC106610496 coding downstream 205629 78294588 ~ 78300233 (-)
LOC110497231 LOC106610547 coding upstream 5202 78515299 ~ 78519538 (-)
LOC110497253 NA coding upstream 28978 78539075 ~ 78543869 (-)
LOC100136185 LOC100136185 coding upstream 36640 78546737 ~ 78569365 (-)
LOC110497254 LOC106602245 coding upstream 83336 78593433 ~ 78599013 (-)
LOC118936784 NA coding upstream 93948 78604045 ~ 78609343 (-)
G927216 NA non-coding downstream 67239 78437347 ~ 78438623 (-)
G927336 NA non-coding downstream 69178 78436473 ~ 78436684 (-)
G927335 NA non-coding downstream 69403 78435681 ~ 78436459 (-)
G927343 NA non-coding upstream 23492 78533589 ~ 78533947 (-)
G927349 NA non-coding upstream 24555 78534652 ~ 78534851 (-)
G927371 NA non-coding upstream 27516 78537613 ~ 78538311 (-)
G927382 NA non-coding upstream 30501 78540598 ~ 78540891 (-)
G927222 LOC106610501 other downstream 63880 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 71766 78382269 ~ 78434096 (-)
G927157 timm10 other downstream 542210 77961348 ~ 77963652 (-)
G927654 LOC106591987 other upstream 708418 79218515 ~ 79222867 (-)
LOC110511089 LOC106591771 other upstream 721074 79222288 ~ 79237169 (-)
G927673 NA other upstream 764596 79274693 ~ 79281790 (-)
G927893 NA other upstream 862019 79372116 ~ 79372872 (-)
G927948 LOC106602109 other upstream 1045873 79554714 ~ 79559828 (-)

Expression


Co-expression Network