LOC110497229 (LOC106602251)


Basic Information

Item Value
gene id LOC110497229
gene name LOC106602251
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78519650 ~ 78533161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934072.1
CGATTCGTAGGTTTGTTTCCGGAAGTCGTGTTGTTTTGTGGATGCTTTTTGTGTTGactctgtagctagttagctaactaccATAACCTTGTTTTCTCTAAATACCTCTGGTATTTATATTTATTCGAATAGCTTCATATACAGTAAATGCTACAACTTAAATCTCGAAATTATAAAAAATGTTATCAGGACCGTCATGGAGAGAGACAACTTCCaacagtagctagcttgctaacgtaAGCTAGATAGCTTCCTAGCCTTTTGCTAGACTGGATCGTAACACTGACTCACCTGAACAAAAGTAGCTAAACGTTACCAACTcttaactgtagctagctacacatagACAGTTTGCTATGATGTCTGAAGCCATCGTAACCTTCCAGTCTCAGCTCTCCGGAGTCATGGAGACGGTATTCAAGGCTGCTATGTACGAGATCACCAGGCTGGTGGAGGATAGCTTCCTCAAGGAGGTGTCCCGGAGCCGGCAGCAGGTCGAGTCACTCAAGAAGCGGCTGCAGTTGTCGGAGAACAGGCGTACGGATGGGGACAGAGAGCTCGGCCGTACGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGAGGAAGCCGAGGAGAGAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGTGTGGCCTGAAGCAGGAGAAGGTACCAGGGGAGGAGTGGAGCAGCTGTGGGGGCGTGGCCAGGGAAACAACCTTCAATGATCTGGAGGAGGCAGAGGCAACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGGGGCCGATGGTTCAGACGTCTCGGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACAGCGGTGCCAGGATGACTGGGGGTCCGCTCTAGACCAGGGGCCTGAACCACCGGGCCCCGAGGGAGAGCCAGAGGACCCCACCGACCCTCTCTACCGCCCCCGCTACAGCATGGAGGACCTTGGGGGCGCCTTTGAGAAGTCTGGTTACAGCGGTGATGGTGGTAGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGCGCTGAGCTACGGAGCTGTGGGTCACTACCAGGTGAACCTGGGGGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTCGCTCCCATCAGAGCCGGAGGGAGCAGGTGGGGTCGCCAACGCCATCCCCCCACCCGGAGGTGGGAGGCCGGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCAGAACACGGGGTCCCAGAGTCAGGTAACAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccTGTATGGTGCTGCTGACGACTTTGGACTCTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACTATGACCTTCCCAGACTTTGGTTCCCTCAAGGCCCACAAGCAGACACATAAAACTGGTAGAGAGTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGTGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGAGTCCACCAGGCAGAGGGACTCCACCTCTGCAGCCACTGTGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCATCAGCGCATTCACACGCAGGAGAAACCTCACCGCTGCACTATGTGTGACAAGAGCTTCACACGCGCAGACATTTTGAAAGTGCACCTGCGCATCCACACCGGGGAGAGACCTTACTGCTGCGCTGTGTGTGGACTCCGCTTCAAACGACTGGACCATCTGAAGTTGCACCAGCGCAAACACAGGCCGGATCTCCTGAACTGaataaaaaaaagttacatttttgttCTTTAGCatatgcttttatccaaagcgacttacttTTAGTGCATTCAACTTAGTTGGTtcgttattattttatttgacattgaggaaaaaaaatgtttttgatcaATTGTTTATTAATAAGGACATTGAAAATATGAGCTGTTGGAAATCTAACCATGTGTCGAATAAGAATGTATGCCTTAAATGATACATTGTCTGTCATAATGACCATGCCAACCTACCAAACATTAGAATAATACTGCTTTCATGACGTCTGcaggggtgtaaagtacttaaggaaaaatactttaaagtactacttaagtcgtttttaggtgtatctgtactttatttatgttttttacaACTTctccttttacttcactacattcttaaagaaaata
>TU1054800
CCAGTCTCAGCTCTCCGGAGTCATGGAGACGGTATTCAAGGCTGCTATGTACGAGATCACCAGGCTGGTGGAGGATAGCTTCCTCAAGGAGGTGTCCCGGAGCCGGCAGCAGGTCGAGTCACTCAAGAAGCGGCTGCAGTTGTCGGAGAACAGGCGTACGGATGGGGACAGAGAGCTCGGCCGTACGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGAGGAAGCCGAGGAGAGAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGTGTGGCCTGAAGCAGGAGAAGGTACCAGGGGAGGAGTGGAGCAGCTGTGGGG

Function

NR:

description
zinc finger protein 180-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934072.1 False 2491 mRNA 0.51 4 78519650 78533161
TU1054800 True 323 TUCP 0.61 2 78520032 78530601

Neighbor

gene id symbol gene type direction distance location
LOC110497227 LOC106610465 coding upstream 18023 78495351 ~ 78501627 (+)
LOC110497234 LOC106610520 coding upstream 36797 78475963 ~ 78482853 (+)
LOC110497230 LOC106610523 coding upstream 55778 78454010 ~ 78463872 (+)
LOC118936487 LOC106602251 coding upstream 67393 78445745 ~ 78452257 (+)
LOC118966656 LOC106610525 coding upstream 86885 78389023 ~ 78432765 (+)
LOC110497242 LOC106610480 coding downstream 1963 78535124 ~ 78538309 (+)
LOC118966657 LOC106602244 coding downstream 100999 78634160 ~ 78643493 (+)
LOC110534505 NA coding downstream 190897 78724058 ~ 78727002 (+)
LOC110497250 LOC106602246 coding downstream 193838 78726999 ~ 78730160 (+)
LOC110534589 LOC106610450 coding downstream 242719 78775880 ~ 78777576 (+)
G926949 NA non-coding upstream 80536 78437274 ~ 78439114 (+)
G926948 NA non-coding upstream 82440 78436943 ~ 78437210 (+)
G926910 NA non-coding upstream 83328 78435656 ~ 78436322 (+)
G926942 NA non-coding upstream 101829 78402379 ~ 78417821 (+)
G926950 NA non-coding downstream 273 78533434 ~ 78533944 (+)
G926979 NA non-coding downstream 1308 78534469 ~ 78534910 (+)
G926982 NA non-coding downstream 8770 78541931 ~ 78542255 (+)
G926954 LOC106610479 non-coding downstream 22830 78555991 ~ 78558069 (+)
LOC110510687 LOC106591138 other upstream 794597 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1065735 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1223641 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1635408 76869703 ~ 76884980 (+)
G924927 NA other upstream 2960051 75557460 ~ 75562892 (+)
G927061 LOC106602167 other downstream 242774 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 519330 79023569 ~ 79065796 (+)
G927584 NA other downstream 667120 79200281 ~ 79202981 (+)
G927606 NA other downstream 748225 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 1064484 79597075 ~ 79601686 (+)

Expression


Co-expression Network