LOC110497242 (LOC106610480)


Basic Information

Item Value
gene id LOC110497242
gene name LOC106610480
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78535124 ~ 78538309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934076.1
GTACAGCAGAAGGGTGACGTGCGATTGAAAACAATCGAATTTCCGGAATCCATCGTTGATTAGCATGTTTTTTTCGTTTTCTTCAATTTAAACAAAAATCTGGAGACAACTACCCCATGTTCATGAAGTGCTGTCAGCCTTTTGGTAATAACGTTTTTAATCAATAGTACTGTATGTTACAAAATATTCCATTATTGACTTGTAACAAGGCTTGTACCAGtatcatgttagctagctagctattttttTTAGCAAGCCTGATGCGACCCCATTTTTGTCTGATACCTTGTTTGTTACCTAGTCGAATTTTGCGATGTGACCGTTTTATTGAACCTATGTTGCACTCTTCTGCGCTGGACGGTCTTCGCCACTTGGTTGTTAGCGAGCTGGAGGAGCTGTCACTCTTATTGGTCAGAGAAACAGATACGCGATGTGATAGACATGGCATATTTCTACCCACTTATTCTGAATAACAGGGCTTTCTGAAGAGATTCACTttaggatcacacacacacacagtcctgacTTGCTCCTGGTGCAGATCCCACTGTGAATTGATCTGTGAAAAAGACACACAAGCAGTATGTCGAAGAACCTCGTCCTCACCTTCCAGACCCAGCTCTCGGGAGTCATGGAGACGGTCCTAAAGTCAGCCATGTATGAGATCACCAGACTGGTGGAGGATGGCTTCCTGGAGGAGGTAAGACGTGGTCAACAGGAAGTGACACGGAGCCACCAGGAAGTGGAGTCTCTGCGGATCTTGCTGCAGCGGGCAGAGAGTCAGCTGAAGGATGTCAGTCAGAGGGCCAGGTGTGTAGACTGTGGCAGGACAGATGTCTACAACGAGGAAACAGACGACAGACCTCCAGGAATACAGGACAGTCTGCTTCTGCTTAGCGGGTGTGACCTGAAGCTGGAGGAGGAGCCAGAGGTCAGGTGGAGAAGCTGTGGACAGGAAACAGTGGAGTCATCACAGGTAGCAGCTAAACcaactcctcccactcctccagcTCCCAGTCCTTCGCTGGTAGGCAGTGTTAAGGAGGAGGACATGGAGCCGTGGAGAATCAAGGTGGCCATACAGCCGTCTGCAGCTCACACCTACACAGAGGAGCAGCGGGACTCAGACACACTCGTTCAGAGTACAGGGGACTCTATTGGGTTTCCCTCTGCGGACCCAGAGGTCCAACAGGTCACCCAGACACCCAGACTAGCAGTGCCATCTCAGAACCAGAGCAGAGGACCCAGTAATGACGGTGACAGAACGAGGAGTAGAGCCTCACCGGTGTGGATAGGCCATAGAATATTAGACACGGATACTGACGTTCACAGACAAGCTCAGTCGAACCTACGACTGGTAAGAGAGCCTCTGTCGTCCTCTGAATCGGCAGAGGCGAAGCAGCTAGCTAGAGATTTCGCTCCCCCAACCAATCCCAGCACAGCGGGggcctctgtctcctcctcctcatcggGCTGTCATGTCTTCAGCTCTCTAAACTACAGGATTCCTTCCAAATATAAGCCCAGCGCTCAAACCCTGCCGCGCATGAGAGTATACAGGGATGCTGCCAAGCGGGGCGGCTACCCAATGTACAACAGGGGGACCGCCCAGGGAGGGCTCACCTCCTCCCAAACACCAACCCAACAAGGGAaccaccagcatcaccaccctgggaGGCTGGCCCTCCGCTGCCCAGTGTGTAGTAAGGTCTTCCCCCATCCCAGTAGCCTTAAGGCCCACCAGCAGACCCACACGGGGGAGAGGCCATTCATCTGCGCCCTGTGTGGCCGGAGCTTCACTAAGTTAAGCAACCTGAAGGCCCACCGGCGTGTTCACACTGGGGAGAGACCCTACAGCTGCTCGGACTGCGGCAAACGCTTCACACAGAAGTGCAACCTTAAGAGGCACCAGAGGATTCACATGGAGAATGATATATGATGTGGGCGGGGaggagtgtgtgggtgtggggaggagtgtgtgggtgtggggaGGAGTGGGTCGGTGTGGGGAGGAGTGGGTCGGTGTGGGGCGGAGTGAGTGGGGAGGAGTGTGGAGCGGAGTGGGTGTGGGGAGGAGTGTGGGGAGGAGTGTGGAGCGGAGTGGGTGTGGGGAGGAGTGTGGGGCGGTGTGGGGCGGAGTGGGTGGGGAGGAGTGTGCTCCAGGGGTGTTGGTTGTTCATTTGACCCATGTTATTGCATAAATAGTATATAGTTTGTTATACCCTTATATCAATGCTGTTGATATGAAGTTAGACATGATGTAGGATAGATAAGCTGTCTTttccccatggtattgtctacaGTTTTTATAATAATGTATAGTCATTTACATTTCTATAAGTGAATTGAAGTTTCTCTAGACCTTGTTCTCAGATGAATGTTCTACCATAGATGGCTAGTGTGGTAGCTAATCAACGCTTGTCTTTTAAAATCTGAGCACATGACAATGCTCTGTCCATGTTCTTCTGAGTGTCCCACatcaaatgtaggcctatacaaCATGTCATGGAATATGTATACCCTAGAAAATGTAACATAAAACAATACCTCGGTCAATGAACAATGGCTGCTGAGTGAATAAGGTCAATATTGTTTGTGAATGGAGATTGTTTTTGTATGAACTAagtggataaaaaaaaatatatatctttatgAACAAAGATTTTTATGAGAACATACAGCATGGTTGCATTGTGAAATCAAAATCAAAGCTGTGCACTGTTCCCATTGGAAGTATAACATACAAGGGATGGATACAATAGTTTTATTTTAGAAGTAAATGGGGTGACTGAAGAAATAGTTTTGGTCTAAACTAGATACAGGCCTAGGATTTGTTTGTGGTTTTTAAATCCAAATTAAAGCAGTCAAGCGTGT
>TU1054797
GGTTGTTCATTTGACCCATGTTATTGCATAAATAGTATATAGTTTGTTATACCCTTATATCAATGCTGTTGATATGAAGTTAGACATGATGTAGGATAGATAAGCTGTCTTttccccatggtattgtctacaGTTTTTATAATAATGTATAGTCATTTACATTTCTATAAGTGAATTGAAGTTTCTCTAGACCTTGTTCTCAGATGAATGTTCTACCATAGATGGCTAGTGTGGTAGCTAATCAACGCTTGTCTTTTAAAATCTGAGCACATGACAATGCTCTGTCCATGTTCTTCTGAGTGTCCCACatcaaatgtaggcctatacaaCATGTCATGGAATATGTATACCCTAGAAAATGTAACATAAAACAATACCTCGGTCAATGAACAATGGCTGCTGAGTGAATAAGGTCAATATTGTTTGTGAATGGAGATTGTTTTTGTATGAACTAagtggataaaaaaaaatatatatctttatgAACAAAGATTTTTATGAGAACATACAGCATGGTTGCATTGTGAAATCAAAATCAAAGCTGTGCACTGTTCCCATTGGAAGTATAACATACAAGGGATGGATACAATAGTTTTATTTTAGAAGTAAATGGGGTGACTGAAGAAATAGTTTTGGTCTAAACTAGATACAGGCCTAGGATTTGTTTGTGGTTTTTAAATCCAAATTAAAGCAGTCAAGCGTG
>TU1054798
TGTAGGATAGATAAGCTGTCTTttccccatggtattgtctacaGTTTTTATAATAATGTATAGTCATTTACATTTCTATAAGTGAATTGAAGTTTCTCTAGACCTTGTTCTCAGATGAATGTTCTACCATAGATGGCTAGTGTGGTAGCTAATCAACGCTTGTCTTTTAAAATCTGAGCACATGACAATGCTCTGTCCATGTTCTTCTGAGTGTCCCACatcaaatgtaggcctatacaaCATGTCATGGAATATGTATACCCTAGAAAATGTAACATAAAACAATACCTCGGTCAATGAACAATGGCTGCTGAGTGAATAAGGTCAATATTGTTTGTGAATGGAGATTGTTTTTGTATGAACTAagtggataaaaaaaaatatatatctttatgAACAAAGATTTTTATGAGAACATACAGCATGGTTGCATTGTGAAATCAAAATCAAAGCTGTGCACTGTTCCCATTGGAAGTATAACATACAAGGGATGGATACAATAGTTTTATTTTAGAAGTAAATGGGGTGACTGAAGAAATAGTTTTGGTCTAAACTAGATACAGGCCTAGGATTTGTTTGTGGTTTTTAAATCCAAATTAAAGCAGTCAAGCGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934076.1 False 2874 mRNA 0.49 2 78535124 78538309
TU1054797 False 703 lncRNA 0.34 1 78537606 78538308
TU1054798 True 614 lncRNA 0.34 1 78537695 78538308

Neighbor

gene id symbol gene type direction distance location
LOC110497229 LOC106602251 coding upstream 1963 78519650 ~ 78533161 (+)
LOC110497227 LOC106610465 coding upstream 33497 78495351 ~ 78501627 (+)
LOC110497234 LOC106610520 coding upstream 52271 78475963 ~ 78482853 (+)
LOC110497230 LOC106610523 coding upstream 71252 78454010 ~ 78463872 (+)
LOC118936487 LOC106602251 coding upstream 82867 78445745 ~ 78452257 (+)
LOC118966657 LOC106602244 coding downstream 95851 78634160 ~ 78643493 (+)
LOC110534505 NA coding downstream 185749 78724058 ~ 78727002 (+)
LOC110497250 LOC106602246 coding downstream 188690 78726999 ~ 78730160 (+)
LOC110534589 LOC106610450 coding downstream 237571 78775880 ~ 78777576 (+)
LOC118966658 NA coding downstream 248449 78786758 ~ 78787742 (+)
G926979 NA non-coding upstream 214 78534469 ~ 78534910 (+)
G926950 NA non-coding upstream 1180 78533434 ~ 78533944 (+)
G926949 NA non-coding upstream 96010 78437274 ~ 78439114 (+)
G926948 NA non-coding upstream 97914 78436943 ~ 78437210 (+)
G926982 NA non-coding downstream 3622 78541931 ~ 78542255 (+)
G926954 LOC106610479 non-coding downstream 17682 78555991 ~ 78558069 (+)
G926988 NA non-coding downstream 35187 78573496 ~ 78576401 (+)
G926994 NA non-coding downstream 48372 78586681 ~ 78587098 (+)
G926999 NA non-coding downstream 53811 78592120 ~ 78592968 (+)
LOC110510687 LOC106591138 other upstream 810071 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1081209 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1239115 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1650882 76869703 ~ 76884980 (+)
G927061 LOC106602167 other downstream 237626 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 514182 79023569 ~ 79065796 (+)
G927584 NA other downstream 661972 79200281 ~ 79202981 (+)
G927606 NA other downstream 743077 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 1059336 79597075 ~ 79601686 (+)

Expression


Co-expression Network