LOC118966657 (LOC106602244)


Basic Information

Item Value
gene id LOC118966657
gene name LOC106602244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78634160 ~ 78643493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989399.1
GGAGACGCATATCAGAGCAACTACTCAACTACTAGTCACTGAAGTTAGaatcatacagtatatattaccattaggagTCAGGTAGAAAGGGATTCATTAGTAAGTTAATACTATAAGTAAAAGTTAAAATCATATATATCACAATATCAGGTCAGTCAGACTGAATTAGTTGATTAATAAATTGATTGTGGTCATCATTGATATTCGGTACGGTTAGTTAAGATGGCCGACTACATCAACAAACAGGTGATTGAATTAAACAAAGTTAATGAAGAAAACCAGAATAGAGCAACGAGGAGCCTGAAGACTGAGACCCATCTCTCAGATAGAAGACTAAGACCCTACAGGCTGGCTGCTGTGTGTTTAGGAGTGCTGTGTGTTCTACAAGTCACTCTCAACATTTCCCTGAGGCTGGCTTTCTACAACAGAGGCAATGAGACTGTGGAGAAAAACccgctacagaccagttacaacactaagactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaaggATAGAGATGATCTCATGTCAAAGTTCTCTAATCTGAAACAAAAATGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACAGTGAAAAAACCCTGGAGGGAGAGTAGACAGgactgtctggagagaggagcagatcTGGTGATCGTAAACAGTGATAtggaacagGAGTTTCTCTTTGGCCTTACTAAGAGAGcctggattggtctgactgactctgttactgaggggacctggaaatgggtggacggcaccccactgaccaccccGTGA

Function

NR:

description
C-type lectin domain family 4 member E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989399.1 True 834 mRNA 0.43 6 78634160 78643493

Neighbor

gene id symbol gene type direction distance location
LOC110497242 LOC106610480 coding upstream 95851 78535124 ~ 78538309 (+)
LOC110497229 LOC106602251 coding upstream 100999 78519650 ~ 78533161 (+)
LOC110497227 LOC106610465 coding upstream 132533 78495351 ~ 78501627 (+)
LOC110497234 LOC106610520 coding upstream 151307 78475963 ~ 78482853 (+)
LOC110497230 LOC106610523 coding upstream 170288 78454010 ~ 78463872 (+)
LOC110534505 NA coding downstream 80565 78724058 ~ 78727002 (+)
LOC110497250 LOC106602246 coding downstream 83506 78726999 ~ 78730160 (+)
LOC110534589 LOC106610450 coding downstream 132387 78775880 ~ 78777576 (+)
LOC118966658 NA coding downstream 143265 78786758 ~ 78787742 (+)
LOC110534603 LOC106602125 coding downstream 162301 78805794 ~ 78816438 (+)
G927006 NA non-coding upstream 26664 78606339 ~ 78607496 (+)
G926999 NA non-coding upstream 41192 78592120 ~ 78592968 (+)
G926994 NA non-coding upstream 47062 78586681 ~ 78587098 (+)
G926988 NA non-coding upstream 57759 78573496 ~ 78576401 (+)
G926954 LOC106610479 non-coding upstream 76091 78555991 ~ 78558069 (+)
G927077 NA non-coding downstream 190663 78834156 ~ 78834407 (+)
G927080 LOC106610560 non-coding downstream 205411 78848904 ~ 78854165 (+)
G927098 NA non-coding downstream 264629 78908122 ~ 78908521 (+)
G927105 NA non-coding downstream 285653 78929146 ~ 78930875 (+)
LOC110513597 LOC107093492 non-coding downstream 291824 78885272 ~ 78937306 (+)
LOC110510687 LOC106591138 other upstream 909107 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1180245 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1338151 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1749918 76869703 ~ 76884980 (+)
G927061 LOC106602167 other downstream 132442 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 408998 79023569 ~ 79065796 (+)
G927584 NA other downstream 556788 79200281 ~ 79202981 (+)
G927606 NA other downstream 637893 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 954152 79597075 ~ 79601686 (+)

Expression


Co-expression Network