LOC110497244 (LOC106610431)


Basic Information

Item Value
gene id LOC110497244
gene name LOC106610431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78696404 ~ 78750918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934081.1
CACGAAGTGCGAGCCATGATGTCACTTCCTTACGAACAATGTCACATATAGTTATTGCGGAATATAACATCTTGCTTGAAAGAGATTGCATACTTTAAACGTTCTTTCTACTGCAGTCGACCACAAACAGACAGAGGCACCAATGAAGAGGCACATCAGACAACTTGTAATTGAAGTTAGAATCATACAGCAGATATTAGTCTGTTAGAAAGGTAATCATACAGTAGAAGTAAGTTAATACtataagtaaaagtaaaaatcatATATATTACAATAAAAGGACAGACAGTCTGAATTAGTTGATTAATTGATTGGTTGGGTTCATTGATATTCGGTACGGTTAGTTAAGATGGCCGACTACGTCAACAAACAGGTGATTGAATTAAAAGAAGTTAATCAAGAATACCAGAATAGAGCAACGAGGAGCGTGAAGACTGAGATCCATCTCTCAGATGGAAGACTAAGACTCTACAGGCTGGCTGCTGTGTGTTTAGGAGTGCTGTGTGTTCTACAAGTAACTCTCAACATCTCCCTGAGACTGGCTTTCTATAACAGAGGCAATGAGACTGCAGAGAAAGAcctgctacagaccagttacaacaccctgagtgaagagagagaccagctacagaccagttacaaaaccctaactgaagagagagaccagctacagaccagttacaacaccctgactgaagagagagaccagctacagaccagttacaaaaccctgactgaagagagagaccaggtAAAACCCATTTACAACAATCTGACTAAAAAGGGAAAGCAGCTACAGACCAGgtacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaaggATAGAGATGATCTCACGTCAAAGTTCTCTAATCTGAAACAAAAATGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACAGTGAAAAAACCCTGGAGGGAGAGTAGACAGGACTGTCTGAAGAGAGGAGCAGACATGGTGATCATAAACAGTGATAAGGAACAGGAGTTTCTCTTCAGCTTCTTTAAGAGAGcctggattggtctgactgactctgttactgaGGGGACCTGGAAATGGGTGGACGGCACCCCACTGAAAACCcaaagTTACTGGCAATCACAGCAACCTGATAATGGTGGTGACAACCCAGCAAATGGGGAGGAGGACTGTGCTGAGCTGAACACAGAAACATGGCGTCCTGTAAAGGCATGGAATGACCAGTCATGTTTTAACAATCGTTACTGGATCTGTGAGAAAGTGGTttaacatcaccatgacaacagaggaggctggtgggaggacgtGCACACATACAGCACCCTACAGTGCACACaacttcattctctctctctctaagacacaccaacacactgcTGGTACTGCACTGAGGGGCAAAACAACCTGATAATGGTGGTGTACCAAGATGTAACTAGGACTGTGCTGATGGTAATATTGGGTATTCTGAGCCTGTATATAAATATTCTGGCAAATCATTTACCTCTCTTCATAACTGGATTTGTGAAGAGTTATACAGTAGCTCATTATATAGTGGTGCTACAGTGCTAATGCATCTCTCTCTAGTTAAACAGTGTGTAGACATACTGTCATCTGGAAAAGTATTGTATTGATTGTTTAATTAAATAGAAACATATTATGTGATTTGCCATAATGTGATTTTTTTCATCGTCAATTATTAGCATAAACGACTTTAGTAAGAAGATGAACTAAGGCTCAGATTAAGTAAGAAAGGAACCTATCAGGTttacctgtcacgttctgaccttcatttcctttgttttgtatttatttagtatggtcagggcgtgagttgggtgggcagtctgtttgattttctatg
>XM_036934082.1
AAGCCATAACGGGACTTCCTTATGAACAATGTTACGAACAGGCCTTGCGAAATATGACTTCCTGCTTGAATCTGATTGGATTCTATCAACTGCAGTCGACCTCAAACAGACTTCAGAGCGGTACCAGTGGAGACGCATATCAGAGTAACTACTCAGCTAATTGTAATTGAAGTTAGaatcatacagtagatattaccattagGAGTCAGAAAGAAAGGTAATCATACAGTAAGTTAATACCGTAAGTACAAGTAAGTTAGAATCATAGATATTACAATATCAGGTCAGTCAGCCTGAATTAGTTCATTCATTGATTGATTGGGGAAATCATTGATATTCGGTACGGTTAGTTAAGATGGCCGACTACATCAACAAACAGGTGATTGAATTAAAAGCAGTTAATGAAGAAAACCGGAACGGAGCAACAAGGAGCGTGAAGACTGAGACCCATCTCTCAGATGGAAGACTAAGACTCTACAGGCTGGCTGCTGTGTGTTTAGGAGTGCTGTGTGTTCTACAAGTAACTCTCAACATCTCCCTGAGACTGGCTTTCTATAACAGAGGCAATGAGACTGCAGAGAAAGAcctgctacagaccagttacaacaccctgagtgaagagagagaccagctacagaccagttacaaaaccctaactgaagagagagaccagctacagaccagttacaacaccctgactgaagagagagaccagctacagaccagttacaaaaccctgactgaagagagagaccaggtAAAACCCATTTACAACAATCTGACTAAAAAGGGAAAGCAGCTACAGACCAGgtacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaaggATAGAGATGATCTCACGTCAAAGTTCTCTAATCTGAAACAAAAATGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACAGTGAAAAAACCCTGGAGGGAGAGTAGACAGGACTGTCTGAAGAGAGGAGCAGACATGGTGATCATAAACAGTGATAAGGAACAGGAGTTTCTCTTCAGCTTCTTTAAGAGAGcctggattggtctgactgactctgttactgaGGGGACCTGGAAATGGGTGGACGGCACCCCACTGAAAACCcaaagTTACTGGCAATCACAGCAACCTGATAATGGTGGTGACAACCCAGCAAATGGGGAGGAGGACTGTGCTGAGCTGAACACAGAAACATGGCGTCCTGTAAAGGCATGGAATGACCAGTCATGTTTTAACAATCGTTACTGGATCTGTGAGAAAGTGGTttaacatcaccatgacaacagaggaggctggtgggaggacgtGCACACATACAGCACCCTACAGTGCACACaacttcattctctctctctctaagacacaccaacacactgcTGGTACTGCACTGAGGGGCAAAACAACCTGATAATGGTGGTGTACCAAGATGTAACTAGGACTGTGCTGATGGTAATATTGGGTATTCTGAGCCTGTATATAAATATTCTGGCAAATCATTTACCTCTCTTCATAACTGGATTTGTGAAGAGTTATACAGTAGCTCATTATATAGTGGTGCTACAGTGCTAATGCATCTCTCTCTAGTTAAACAGTGTGTAGACATACTGTCATCTGGAAAAGTATTGTATTGATTGTTTAATTAAATAGAAACATATTATGTGATTTGCCATAATGTGATTTTTTTCATCGTCAATTATTAGCATAAACGACTTTAGTAAGAAGATGAACTAAGGCTCAGATTAAGTAAGAAAGGAACCTATCAGGTttacctgtcacgttctgaccttcatttcctttgttttgtatttatttagtatggtcagggcgtgagttgggtgggcagtctgtttgattttctatg
>XM_036934083.1
ACAATGTTACGAACAGGCCTTGCGAAATATGACTTCCTGCTTGAATCTGATTGGATTCTATCAACTGCAGTCGACCTCAAACAGACTTCAGAGCGGTACCAGTGGAGACGCATATCAGAGTAACTACTCAGCTAATTGTAATTGAAGTTAGaatcatacagtagatattaccattagGAGTCAGAAAGAAAGGTAATCATACAGTAAGTTAATACCGTAAGTACAAGTAAGTTAGAATCATAGATATTACAATATCAGGTCAGTCAGCCTGAATTAGTTCATTCATTGATTGATTGGGGAAATCATTGATATTCGGTACGGTTAGTTAAGATGGCCGACTACATCAACAAACAGGTGATTGAATTAAAAGCAGTTAATGAAGAAAACCGGAACGGAGCAACAAGGAGCGTGAAGACTGAGACCCATCTCTCAGATGGAAGACTAAGACTCTACAGGCTGGCTGCTGTGTGTTTTGGAGTGCTGTGTCTTCTACAAGTCACCCTCAACATCTCCCTGAGGCTGGCTTTCTATAACAGAGGCAATGTGACTGTGGAGAGAGAcaagctacagaccagttacaacacactgactgcagagagagaccagcttcaGAAGGAAAGAGATGATCTCATGAGAAATTTCTCTAATCTGAAACAAACCTGTCCTGATGGCTGGCAGAAGTTCAACTCCAGTTGGTACTTCCTGTCTACTGAGACTAAAACCtggaaggagagcagagaggactgtctggagagaggagcCGACCTGGTGATCGTAAACAGTGATATGgaacagCAGTTTCTCTTAGGCCTCAATAAGGGAGcctggattggtctgactgactctgttactgaGGGGACCTGGAGATGGGTGGACGACAccccactgaccaccccaagTTACTGGCACTCACAGCAACCTGATAATGGTGGTGACAACCCAGCAAAtggggaggaggactgtgttgagcTGAACACAGAAACATGGCGTCCTGCAAAGGCATGGAATGACCAGTCATGTTTAGACCATCGTCACTGGATCTGTGAGAAAGTGGTttaacatcaccatgacaacagaggaggctggtgggaggacgcGCGGTGGGAGGACATACAGCACCTTACAGTGCTCACcacttcattctctctctctctctctaagacacacacacgcacacacaccaacacactgctGGTACTGTACTGAGTGGCAAACAACCTGATAATGGTTGTGAACCAGGATATACTGTAACAAGGACTGTGCTGATGTTAATATTGGGTATTCTGAGCCTGTATATAAATATTCTGACATATCATTTACCTCTCTTCATAACTGGATTTGTGTTATATAGTAGCTCATTATATAGTAGTGCTACAGTGCTAATGCATCTCTCTCTAGTTAAACAGTGTGTAGACATATTGTCATCTGTAAAATGCTTGTATTCATTGTTTTAAATAGAAACATGTTATGTGATTTGCCATAGGCTTGTGCTTTTTTCATTATCAATTATTAGTACAAATCTCTTTAGTAAAAGATGAGGCTCAGAAAAGAAAGGCTCAGTAAGAAAGGAACCTAGCAATTGACCAGCTTCCTGATTGAATGTGATTGGATTGTTAAAACAATGTGACTTGCAGTTGGACACAGACGGTTGGCAGAACAGTACTGAGAGGATACACGCTGcacgcaggcagacacacacagacacacagacacacagacacacacacacatttagaaaGGTAATCACATAGTTAGTTCAGATGTATGACTACTTTAACAAACAGGTTATTGAAGAACATGAGAAAAGAGCAACAAGGAGAGTAAATACTGAGACCCGTCGCTCAGGTAAGAACTAAGAAAATGATCtattacacacatacacgcacatgtGCACACCTTGAATTTCGTGATTTTAGGCGCAAGGCTATTTGCCCTTCAAGAGGTTCCCAATCTGCCAGGGCACCAAGGCAATCTGCCAGGGCACCCTGTCCATGATCCACAATAACCTGTTAAATTGATTTGAAAAACACTAGCCATTCTGTTAAGAAAAACATTAGTCTATGTAAAGGTCATACATAATTACAATATTGGAACAATAGCGCTTTTAGCTTACTGCTGTGTGCATTGCTGTtgttataatgtgaagaaatagcctaatagttcattaacattttaagctaaatgttctgatctgttgcatcagcctctttgattttaaac
>XM_036934084.1
TTATGAACAATGTTACGAACAGGCCTTGCGAAATATGACTTCCTGCTTGAATCTGATTGGATTCTATCAACTGCAGTCGACCTCAAACAGACTTCAGAGCGGTACCAGTGGAGACGCATATCAGAGTAACTACTCAGCTAATTGTAATTGAAGTTAGaatcatacagtagatattaccattagGAGTCAGAAAGAAAGGTAATCATACAGTAAGTTAATACCGTAAGTACAAGTAAGTTAGAATCATAGATATTACAATATCAGGTCAGTCAGCCTGAATTAGTTCATTCATTGATTGATTGGGGAAATCATTGATATTCGGTACGGTTAGTTAAGATGGCCGACTACATCAACAAACAGGTGATTGAATTAAAAGCAGTTAATGAAGAAAACCGGAACGGAGCAACAAGGAGCGTGAAGACTGAGACCCATCTCTCAGATGGAAGACTAAGACTCTACAGGCTGGCTGCTGTGTGTTTTGGAGTGCTGTGTCTTCTACAAGTCACCCTCAACATCTCCCTGAGGCTGGCTTTCTATAACAGAGGCAATGTGACTGTGGAGAGAGAcaagctacagaccagttacaacacactgactgcagagagagaccagcttcaGAAGGAAAGAGATGATCTCATGAGAAATTTCTCTAATCTGAAACAAACCTGTCCTGATGGCTGGCAGAAGTTCAACTCCAGTTGGTACTTCCTGTCTACTGAGACTAAAACCtggaaggagagcagagaggactgtctggagagaggagcCGACCTGGTGATCGTAAACAGTGATATGgaacagTTTCTCTTAGGCCTCAATAAGGGAGcctggattggtctgactgactctgttactgaGGGGACCTGGAGATGGGTGGACGACAccccactgaccaccccaagTTACTGGCACTCACAGCAACCTGATAATGGTGGTGACAACCCAGCAAAtggggaggaggactgtgttgagcTGAACACAGAAACATGGCGTCCTGCAAAGGCATGGAATGACCAGTCATGTTTAGACCATCGTCACTGGATCTGTGAGAAAGTGGTttaacatcaccatgacaacagaggaggctggtgggaggacgcGCGGTGGGAGGACATACAGCACCTTACAGTGCTCACcacttcattctctctctctctctctaagacacacacacgcacacacaccaacacactgctGGTACTGTACTGAGTGGCAAACAACCTGATAATGGTTGTGAACCAGGATATACTGTAACAAGGACTGTGCTGATGTTAATATTGGGTATTCTGAGCCTGTATATAAATATTCTGACATATCATTTACCTCTCTTCATAACTGGATTTGTGTTATATAGTAGCTCATTATATAGTAGTGCTACAGTGCTAATGCATCTCTCTCTAGTTAAACAGTGTGTAGACATATTGTCATCTGTAAAATGCTTGTATTCATTGTTTTAAATAGAAACATGTTATGTGATTTGCCATAGGCTTGTGCTTTTTTCATTATCAATTATTAGTACAAATCTCTTTAGTAAAAGATGAGGCTCAGAAAAGAAAGGCTCAGTAAGAAAGGAACCTAGCAATTGACCAGCTTCCTGATTGAATGTGATTGGATTGTTAAAACAATGTGACTTGCAGTTGGACACAGACGGTTGGCAGAACAGTACTGAGAGGATACACGCTGcacgcaggcagacacacacagacacacagacacacagacacacacacacatttagaaaGGTAATCACATAGTTAGTTCAGATGTATGACTACTTTAACAAACAGGTTATTGAAGAACATGAGAAAAGAGCAACAAGGAGAGTAAATACTGAGACCCGTCGCTCAGGTAAGAACTAAGAAAATGATCtattacacacatacacgcacatgtGCACACCTTGAATTTCGTGATTTTAGGCGCAAGGCTATTTGCCCTTCAAGAGGTTCCCAATCTGCCAGGGCACCAAGGCAATCTGCCAGGGCACCCTGTCCATGATCCACAATAACCTGTTAAATTGATTTGAAAAACACTAGCCATTCTGTTAAGAAAAACATTAGTCTATGTAAAGGTCATACATAATTACAATATTGGAACAATAGCGCTTTTAGCTTACTGCTGTGTGCATTGCTGTtgttataatgtgaagaaatagcctaatagttcattaacattttaagctaaatgttctgatctgttgcatcagcctctttgattttaaac

Function

NR:

description
C-type lectin domain family 4 member E-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934081.1 False 1964 mRNA 0.42 6 78696404 78712050
XM_036934082.1 False 1970 mRNA 0.42 6 78696404 78750918
XM_036934083.1 False 2220 mRNA 0.42 6 78737731 78750893
XM_036934084.1 True 2223 mRNA 0.42 6 78737731 78750899

Neighbor

gene id symbol gene type direction distance location
LOC118936784 NA coding downstream 87061 78604045 ~ 78609343 (-)
LOC110497254 LOC106602245 coding downstream 97391 78593433 ~ 78599013 (-)
LOC100136185 LOC100136185 coding downstream 127039 78546737 ~ 78569365 (-)
LOC110497253 NA coding downstream 152535 78539075 ~ 78543869 (-)
LOC110497231 LOC106610547 coding downstream 176866 78515299 ~ 78519538 (-)
LOC118936785 NA coding upstream 4942 78755860 ~ 78756740 (-)
LOC118936786 LOC106610904 coding upstream 52844 78803762 ~ 78804351 (-)
LOC110498601 smc2 coding upstream 65559 78816477 ~ 78862674 (-)
LOC118936787 NA coding upstream 66381 78817299 ~ 78817965 (-)
LOC118936936 NA coding upstream 113965 78864883 ~ 78866921 (-)
G927408 NA non-coding downstream 13430 78615479 ~ 78682974 (-)
G927407 NA non-coding downstream 82775 78612505 ~ 78613629 (-)
G927406 NA non-coding downstream 89321 78606679 ~ 78607083 (-)
G927400 NA non-coding downstream 109849 78586072 ~ 78586555 (-)
G927397 NA non-coding downstream 113640 78582531 ~ 78582764 (-)
G927464 NA non-coding upstream 64574 78815492 ~ 78860585 (-)
G927488 NA non-coding upstream 130334 78881252 ~ 78881724 (-)
G927478 NA non-coding upstream 141024 78891942 ~ 78939199 (-)
G927477 NA non-coding upstream 188707 78939625 ~ 78941438 (-)
LOC110497238 LOC106610518 other downstream 186473 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 222345 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 251263 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 254422 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 262308 78382269 ~ 78434096 (-)
G927654 LOC106591987 other upstream 467597 79218515 ~ 79222867 (-)
LOC110511089 LOC106591771 other upstream 480253 79222288 ~ 79237169 (-)
G927673 NA other upstream 523775 79274693 ~ 79281790 (-)
G927893 NA other upstream 621198 79372116 ~ 79372872 (-)
G927948 LOC106602109 other upstream 805052 79554714 ~ 79559828 (-)

Expression


Co-expression Network