Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497250 |
| gene name | LOC106602246 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 78726999 ~ 78730160 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| C-type lectin domain family 4 member E-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005034239.1 | True | 471 | mRNA | 0.47 | 3 | 78726999 | 78730160 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118966657 | LOC106602244 | coding | upstream | 83506 | 78634160 ~ 78643493 (+) |
| LOC110497242 | LOC106610480 | coding | upstream | 188690 | 78535124 ~ 78538309 (+) |
| LOC110497229 | LOC106602251 | coding | upstream | 193838 | 78519650 ~ 78533161 (+) |
| LOC110497227 | LOC106610465 | coding | upstream | 225372 | 78495351 ~ 78501627 (+) |
| LOC110497234 | LOC106610520 | coding | upstream | 244146 | 78475963 ~ 78482853 (+) |
| LOC110534589 | LOC106610450 | coding | downstream | 45720 | 78775880 ~ 78777576 (+) |
| LOC118966658 | NA | coding | downstream | 56598 | 78786758 ~ 78787742 (+) |
| LOC110534603 | LOC106602125 | coding | downstream | 75634 | 78805794 ~ 78816438 (+) |
| LOC118936788 | LOC106591635 | coding | downstream | 144626 | 78874786 ~ 78881196 (+) |
| LOC110513597 | LOC107093492 | coding | downstream | 155112 | 78885272 ~ 78937306 (+) |
| G927013 | NA | non-coding | upstream | 48222 | 78618160 ~ 78678777 (+) |
| G927006 | NA | non-coding | upstream | 119503 | 78606339 ~ 78607496 (+) |
| G926999 | NA | non-coding | upstream | 134031 | 78592120 ~ 78592968 (+) |
| G926994 | NA | non-coding | upstream | 139901 | 78586681 ~ 78587098 (+) |
| G926988 | NA | non-coding | upstream | 150598 | 78573496 ~ 78576401 (+) |
| G927077 | NA | non-coding | downstream | 103996 | 78834156 ~ 78834407 (+) |
| G927080 | LOC106610560 | non-coding | downstream | 118744 | 78848904 ~ 78854165 (+) |
| G927098 | NA | non-coding | downstream | 177962 | 78908122 ~ 78908521 (+) |
| G927105 | NA | non-coding | downstream | 198986 | 78929146 ~ 78930875 (+) |
| LOC110510687 | LOC106591138 | other | upstream | 1001946 | 77722229 ~ 77734491 (+) |
| LOC110534594 | LOC106577279 | other | upstream | 1273084 | 77360360 ~ 77632808 (+) |
| G926448 | LOC105024706 | other | upstream | 1430990 | 77293833 ~ 77296009 (+) |
| LOC110531901 | LOC106610543 | other | upstream | 1842757 | 76869703 ~ 76884980 (+) |
| G927061 | LOC106602167 | other | downstream | 45775 | 78775935 ~ 78787563 (+) |
| LOC110515636 | LOC105020871 | other | downstream | 322331 | 79023569 ~ 79065796 (+) |
| G927584 | NA | other | downstream | 470121 | 79200281 ~ 79202981 (+) |
| G927606 | NA | other | downstream | 551226 | 79281386 ~ 79284144 (+) |
| LOC110514189 | LOC106593948 | other | downstream | 867485 | 79597075 ~ 79601686 (+) |
