LOC110534603 (LOC106602125)


Basic Information

Item Value
gene id LOC110534603
gene name LOC106602125
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78805794 ~ 78816438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989400.1
ATGGCTCTttgtcccccccctccctcagagcCGGTGTACAGGTCGTCGTGCGCCCTGACGGTCCACGCTATCAGCCACTACAGCCCTGATGTCCTGAAGGGGCATGCGGTGGTAGCGTTGCCGCTAGCCTTCTTGGGTATGCACCAGGCGCCGGGACCAGacgaggagaagggagagagccaCGACGCCACGCTGTGGAACGAAGTCTGGCAGGAACACGTaccagGAAGCTTTGGGGGCATCCGCCTCTACATGACGGAGCTGATCGACATTACCCAGAAGGCCTTGCAGTCCCAGTCGTGGAAGATGAAGGCCCAGGGCGCGGCTGCCATGGCGTCGATCGCTAAGCAACAGACGGGTTCTCTGGTCGCCCCTCACCTGGGTATGGTGTTGTCCGCTCTACTGCAGGGACTGGTTGGACGCACCTGGActggaaagGAGGAGCTGTTGAACGCCATCGGCTCTGTGGTGTCTAAGTGCAGTGGTGAACTCCAGAAGTCCTCCCCGGGCCAGCCCAGTGTACCAGAGGTGATTGATCTGGTGTTGAAGGAGTGTCGTAAAGACAACCTGGTCTACAAGATGGCTGCCCTGGGCTGTGCTGCTGACGTCCTGCAGGCCACACAGGAAGACCGCTTCAGTGATATGGCAGACATACTCATACCACTCATTAAGAAGAACTCTGCAGCAACTTCGAGGTTGAGACATGATAGTGATGACGATCGGGATGAGAAGGAGAAGGAGCTGCAGACTGAAGCTCTACTCTGTGCCTTCCAGACGCTGGGCAAGACCTGGCCCAACAACACACAAACCCAGGAGCGTTTCCAGTTGGACCTGTGCTGTCTGATGTGTGAGAGGTTGAAACTCAGTACATGGAGGGTCCAGGTGGGGGTGCTACAGTCTATGAAGACATACTTCCAGAGGTTGCTACTgttggagaaagagaaagacaaccaGAACTTCACAGCCTTGTCCCTTATTCTCACAGAGACATGCAGCGCACTCACATACCCACTAGAGAATAAGAGTTACTCCTCTGTGAGGACCGAAGCGTTGTCTGTTGTGGATCTGCTGGTGAAGAGGACAGGAGAGAGCGGTCAGTGGGAGTGTGTCTCGGGAAAGAGTCGCGAACAGCTGCAGCGTTCACTGTCCaccctgcagacagacagcagacctGACCTACGAGACAAGGCCCAGGAACTACGGAGGAACATCCAGAGTcaaccctgaacacacacacacccacacctagTCAACCTTGAATACACACCCCAGATCTGATGATTATTATGTGTATTGTGTCAATGGGTGGACGGCTGGCTGGGTCATTTATAATTGCCATATCAACTCACTATGTAAacaaaacagcaccctattccctatatagtgcactactgttgaccaggtcccataggatTCTCtgctctgaagtagtgcactactgttgaccagggatcatcaactaaatTCAGCCGCGGGACAATTTATAATTTTTATCTTGATCAGATAAGATCACAATGATTATAATTGACTAAAAACATCCATTTTGGATTTGTAAAGGGTCACATGCATCTCTTGGGAGGCTTTGGAATAGATTTCCCAAACTAAAATCAGTTAGAGATGGGTTTTCTTTACAATAAACAAGTCCTGGGCAATTTGGGAACCTGGAGGCGTTGGGGATTTGTCCTGTGTAACAACggctcccttctttctctcctacAGCAGCCAGTACAGTACGTCCCACATGGTGCCCTGATTCTCTAAACACTACTAGTCGCCATTTGGGGAGGATACTGCAACTTTATTTAACACATTGGCTGTCAACTCCttggtcctggagagctactgggtgttGTTCCAGCCAATCagctcattccacagagggctgaGTGTGTGTACCTTCTCCCTCGATGAatttaaggtcactaattagtaaggaccTCCCCTCACCTCCAGGTCTTTAATTGAAAGGGGAGAAACCTGTGgacatttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgactgcctaactgcctgttcaatgacagatttgtaccttgtcagctcggggatttgaacttgcaacctttcggttacaagtccaatgctctaaccactaggctaccctgtcgtcCCATTATGGTCCTCCGTGGAATGAGATGAACACCCCTGATCTACAGTGtgagcaggcttttgttccagcccaacacttatCACGgtttggactgaaataggtgtcGGAGCTCCACAATTCTGGTGAACTCCTGCACTGGTCTTGATGTTAACTAGAGTTGGTGACCAGTGATGTTTCTCTGTCTGAACTCTCCCCCAGTTTGCatgtgtaaaaatatattttcagccATGTTGATTTAAAAACCCAACAATGAACAGTGGGGGTCGGTTGGTGTGAGGCATGTAATTCTTGTGAATTTGTctccaaaataaataaataaacaacctTGAAA

Function

NR:

description
proteasome-associated protein ECM29 homolog

GO: NA

KEGG:

id description
K11886 ECM29; proteasome component ECM29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989400.1 True 2489 mRNA 0.49 9 78805794 78816438

Neighbor

gene id symbol gene type direction distance location
LOC118966658 NA coding upstream 18052 78786758 ~ 78787742 (+)
LOC110534589 LOC106610450 coding upstream 28218 78775880 ~ 78777576 (+)
LOC110497250 LOC106602246 coding upstream 75634 78726999 ~ 78730160 (+)
LOC110534505 NA coding upstream 78792 78724058 ~ 78727002 (+)
LOC118966657 LOC106602244 coding upstream 162301 78634160 ~ 78643493 (+)
LOC118936788 LOC106591635 coding downstream 58348 78874786 ~ 78881196 (+)
LOC110513597 LOC107093492 coding downstream 68834 78885272 ~ 78937306 (+)
LOC110516209 NA coding downstream 123000 78939438 ~ 78942355 (+)
LOC110517676 NA coding downstream 167926 78984364 ~ 78994842 (+)
LOC118936789 NA coding downstream 178533 78994971 ~ 78995813 (+)
G927013 NA non-coding upstream 127017 78618160 ~ 78678777 (+)
G927006 NA non-coding upstream 198298 78606339 ~ 78607496 (+)
G926999 NA non-coding upstream 212826 78592120 ~ 78592968 (+)
G926994 NA non-coding upstream 218696 78586681 ~ 78587098 (+)
G926988 NA non-coding upstream 229393 78573496 ~ 78576401 (+)
G927077 NA non-coding downstream 17718 78834156 ~ 78834407 (+)
G927080 LOC106610560 non-coding downstream 32466 78848904 ~ 78854165 (+)
G927098 NA non-coding downstream 91684 78908122 ~ 78908521 (+)
G927105 NA non-coding downstream 112708 78929146 ~ 78930875 (+)
G927061 LOC106602167 other upstream 18231 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 275193 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1080741 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1351879 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1509785 77293833 ~ 77296009 (+)
LOC110515636 LOC105020871 other downstream 236053 79023569 ~ 79065796 (+)
G927584 NA other downstream 383843 79200281 ~ 79202981 (+)
G927606 NA other downstream 464948 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 781207 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 910607 79727045 ~ 79782057 (+)

Expression


Co-expression Network