LOC118936788 (LOC106591635)


Basic Information

Item Value
gene id LOC118936788
gene name LOC106591635
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78874786 ~ 78881196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934088.1
AGCACGTCCCAAAACCAGAGGAGGCACACTTGCTATTTAACACAACCATTTCTGTGCCAAAAAACAACTgtcggtagagttgaaaatgccatGGAAACGGATTtaacttgttttatttttttatttggcgaATGTAAAacacagacgctgggagacgagaagtACGAGGTGTGGATTTAATAATACATATACATGAAAACAAACCACGAACAACGTCTGTGACATAAGAACAGGAAGATAACCACAAGGCTGACTGGGGAATGAACCtgagggagagacaggtagagaggcatGGAAATCATGGAAGAGATGCAGTCCAGCAAGCCAATGAAAACCAAGCCAGGAGAGATAGGAGCTGCTTTGAGAGCCTGACCTTATGGGACCTGAAGAGCCACAACCACAATCCTTCTCTGTGGGTAGTTAAAGACAGAGAAGAAGATGTGGAATACCAGGAGAGAAGCGAGAGTGAGGAaggagatgaagaggaagatgtaccTATGTGTTTCCTGTTGAATCACCACTTCAGTCACCTGGCCACTAAATTTCCTGAGTGCAAGTTCCTGATGATCCTCGCCGGGCAGTGTGTCCCCAACTACCCTGTCAGCCACCTCCCCACCCTGTTCATCTACGACTCAGGATGTATCATCAACTCACTGATAGGAGAGAAGGCCTGTGGAGGGAGGAACGTATTGGAAgatgAGCTGAAGTGGATGCTGGCCCAGTCGGGAGCGTTTGTGATTGACAGCTACGAGGCCTTATACCAGGAGGGCACGCCCATCACGACGCCGCGTtcggaacaggaacaggaagacTACAGCGATGACCAGTCTGATCACTATGACAACCAAGACGCCGAGGTGTAGTCATGGTTACAGGGACAAAGAGACAGCAGTGTAGAACTCTATGACATCATGAAACATTGGTGTAAACTCTGATATAATATCCTCATTACTCATTGACTCATTACTCATTACAAATCTGATCCAGATCAGATTTTATACAGGTGTAGGTAGCCGCTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGGAGCCACTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTTATACAGGTGTAGGTAGCTACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCGCTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTTATactgggttaaatgcggaagacacatttcagttgaatacattcagttggacaacagactaggtatccccccccctttccctttcctaaCTCATATTGAGCTCACTTGTTGTTTTATAATATGCTGTAATAAAGTTTGTTATATCT
>XM_036934090.1
TTACGTCATCACGCACTACTTTTTTATATGCAAGGAGTCAGTTCGGTGGAAACAGCGATGGTGGGGAAAATGCGCGTATTTTTTCTCTATCCGGATtctagaatattcgcatgaaaatgtgtcgccaattggatggaaacctaatTAATTATAAGATTACTATGGACAAAATGTATCAAActgcagtcaagcatcgatcatcatgtcaccggaataagaccctcgatatttattggaaaggagcatcaaactCATCACCTTTTCACTTTCACCATCCTGTGAAGTCCATCATCATcgtttatttaatctgtagcctcaTTAAACTGCATGTTATCCTGAGTCGTAGTACGTCACAGCGTGACTCCATCTTGAGTTCCATGTGATGCAAGCCAATGAAAACCAAGCCAGGAGAGATAGGAGCTGCTTTGAGAGCCTGACCTTATGGGACCTGAAGAGCCACAACCACAATCCTTCTCTGTGGGTAGTTAAAGACAGAGAAGAAGATGTGGAATACCAGGAGAGAAGCGAGAGTGAGGAaggagatgaagaggaagatgtaccTATGTGTTTCCTGTTGAATCACCACTTCAGTCACCTGGCCACTAAATTTCCTGAGTGCAAGTTCCTGATGATCCTCGCCGGGCAGTGTGTCCCCAACTACCCTGTCAGCCACCTCCCCACCCTGTTCATCTACGACTCAGGATGTATCATCAACTCACTGATAGGAGAGAAGGCCTGTGGAGGGAGGAACGTATTGGAAgatgAGCTGAAGTGGATGCTGGCCCAGTCGGGAGCGTTTGTGATTGACAGCTACGAGGCCTTATACCAGGAGGGCACGCCCATCACGACGCCGCGTtcggaacaggaacaggaagacTACAGCGATGACCAGTCTGATCACTATGACAACCAAGACGCCGAGGTGTAGTCATGGTTACAGGGACAAAGAGACAGCAGTGTAGAACTCTATGACATCATGAAACATTGGTGTAAACTCTGATATAATATCCTCATTACTCATTGACTCATTACTCATTACAAATCTGATCCAGATCAGATTTTATACAGGTGTAGGTAGCCGCTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGGAGCCACTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTTATACAGGTGTAGGTAGCTACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCGCTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTTATactgggttaaatgcggaagacacatttcagttgaatacattcagttggacaacagactaggtatccccccccctttccctttcctaaCTCATATTGAGCTCACTTGTTGTTTTATAATATGCTGTAATAAAGTTTGTTATATCT
>XM_036934089.1
gagctgataaggtaaaaatctgtcgatctgcccctaaacaaggcagttaacccactgtccctaggccatcactgacttgcctagttaaattaaggtaaaattTAATAAATAGAGTCGATGATATTGCAACTAAATAGTTAACATTTATTGATCAAACCCTTGAAAACGGCACTccgttgtcaatggttttagcggAGCTGCTGGTctccttgaccccccccccccccagcaggcaAATAGAACGCCTCCCACCGTATTGTGACGTTGTATTGATGACGACCTATCAGAATGAGTTCTATAAACGGTTCCAGTTCCAACCCAACTCCATTATGACATCACGGTCTTTGTGTTTTGATTTGAGTGTCAACTTGTTTCTGTGCTGCTATGTGACAGAATGTTCATATTTCCATGCATATTGATCTGAGCATCTTTGAGGAACAATGCAGCAAGCCAATGAAAACCAAGCCAGGAGAGATAGGAGCTGCTTTGAGAGCCTGACCTTATGGGACCTGAAGAGCCACAACCACAATCCTTCTCTGTGGGTAGTTAAAGACAGAGAAGAAGATGTGGAATACCAGGAGAGAAGCGAGAGTGAGGAaggagatgaagaggaagatgtaccTATGTGTTTCCTGTTGAATCACCACTTCAGTCACCTGGCCACTAAATTTCCTGAGTGCAAGTTCCTGATGATCCTCGCCGGGCAGTGTGTCCCCAACTACCCTGTCAGCCACCTCCCCACCCTGTTCATCTACGACTCAGGATGTATCATCAACTCACTGATAGGAGAGAAGGCCTGTGGAGGGAGGAACGTATTGGAAgatgAGCTGAAGTGGATGCTGGCCCAGTCGGGAGCGTTTGTGATTGACAGCTACGAGGCCTTATACCAGGAGGGCACGCCCATCACGACGCCGCGTtcggaacaggaacaggaagacTACAGCGATGACCAGTCTGATCACTATGACAACCAAGACGCCGAGGTGTAGTCATGGTTACAGGGACAAAGAGACAGCAGTGTAGAACTCTATGACATCATGAAACATTGGTGTAAACTCTGATATAATATCCTCATTACTCATTGACTCATTACTCATTACAAATCTGATCCAGATCAGATTTTATACAGGTGTAGGTAGCCGCTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGGAGCCACTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTTATACAGGTGTAGGTAGCTACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCGCTCATATTGACTCATTACATGATGTGATCCAGATCAGATTTAATACAGGTGTAGGTAGCCACTCATATTAACTTGTTACATGATGTGATCCAGATCAGATTTTATactgggttaaatgcggaagacacatttcagttgaatacattcagttggacaacagactaggtatccccccccctttccctttcctaaCTCATATTGAGCTCACTTGTTGTTTTATAATATGCTGTAATAAAGTTTGTTATATCT

Function

NR:

description
PREDICTED: phosducin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934088.1 False 1509 mRNA 0.43 5 78874786 78881196
XM_036934090.1 False 1574 mRNA 0.43 5 78875239 78881196
XM_036934089.1 True 1635 mRNA 0.43 5 78876577 78881196

Neighbor

gene id symbol gene type direction distance location
LOC110534603 LOC106602125 coding upstream 58348 78805794 ~ 78816438 (+)
LOC118966658 NA coding upstream 87044 78786758 ~ 78787742 (+)
LOC110534589 LOC106610450 coding upstream 97210 78775880 ~ 78777576 (+)
LOC110497250 LOC106602246 coding upstream 144626 78726999 ~ 78730160 (+)
LOC110534505 NA coding upstream 147784 78724058 ~ 78727002 (+)
LOC110513597 LOC107093492 coding downstream 4076 78885272 ~ 78937306 (+)
LOC110516209 NA coding downstream 58242 78939438 ~ 78942355 (+)
LOC110517676 NA coding downstream 103168 78984364 ~ 78994842 (+)
LOC118936789 NA coding downstream 113775 78994971 ~ 78995813 (+)
LOC118936790 NA coding downstream 122494 79003589 ~ 79004205 (+)
G927080 LOC106610560 non-coding upstream 20621 78848904 ~ 78854165 (+)
G927077 NA non-coding upstream 40379 78834156 ~ 78834407 (+)
G927013 NA non-coding upstream 196009 78618160 ~ 78678777 (+)
G927006 NA non-coding upstream 267290 78606339 ~ 78607496 (+)
G926999 NA non-coding upstream 281818 78592120 ~ 78592968 (+)
G927098 NA non-coding downstream 26926 78908122 ~ 78908521 (+)
G927105 NA non-coding downstream 47950 78929146 ~ 78930875 (+)
G927109 NA non-coding downstream 70810 78952006 ~ 79021764 (+)
G927117 NA non-coding downstream 84058 78965254 ~ 78967722 (+)
G927061 LOC106602167 other upstream 87223 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 344185 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1149733 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1420871 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1578777 77293833 ~ 77296009 (+)
LOC110515636 LOC105020871 other downstream 171295 79023569 ~ 79065796 (+)
G927584 NA other downstream 319085 79200281 ~ 79202981 (+)
G927606 NA other downstream 400190 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 716449 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 845849 79727045 ~ 79782057 (+)

Expression


Co-expression Network