LOC110517676


Basic Information

Item Value
gene id LOC110517676
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78984364 ~ 78994842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934098.1
CAAAGTCCCACCTGTAGGTGTGATCGCGTCGTCAGTCAGAGATAGGACTGCTACATAAAGTGGCGCAACAGACGTGATGACAGACACTCGTCCCTCGCTCTACTGCTGCGGTCAAAACAAAACTGACTGCGGTTGGTCCGGCGGAGGATGAATGAGGAGAGGTTTGATGATCCCATTTACAGCAGCTGCAATGGTCCAATGGGCTTCACCGAAGGAGACCGGGAATCCTTACGGACACCATGCAACCGAACTCACCTCTCAGGTTCCGAATGCTTAAGAAGACACTACATACTACTGCTGTGTGTGGTAGTAGTGGGGTGTACTGTGGCTGTCATAAGTCTGTTTGCCCAGAAAAACAATCTAATTGCACAGAGACAGCAGTCAAATATTGAAACCTCTGcggcagagagggaagagatgaagtCTCTGAAATCAGAGGACTACAGCGTTCTTCTAAATATGATTTTAAAGCAGGAAGGGTGGAAGTATATCAACTCCAGTTTGTACTACATCTCTACTGAGACCAAGTCCTGGGGTGAGAGCAGACCTTACTGCCAACGGAAGGGATTGGACCTGGTGACCATAAACAGCAAAGACGAAGAGGACTTTCTCCTTGAAGTGGTCCGTGCTAAGAAGTTGGATGTAGCCTGGATTGGTTTTTCTCCCAACAACACAAAGGAGATATCTACACGGGTGAAGAGAGGTGTGGGGTCAGAAGACGGTGCTCAGGAAGAGGACTGTGCTAAGCTTACGGTATACGAGACACCTGCAGTGAAAGAAGTAACCGGGAGACAATGTGGGACACAAAAATACTGTATTTGTGAAAAATACCTGGATGTCAAATACAATGTAAGCAAGAGAAACCGTTAACTTGTTCTTCTGAAAGGATTCGACTTTTTAAAATGGAGGGAACAACTGCTAGCTTCAACTTCTTTTTAATGGAGGGAACAACTACTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTACTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTGCATTTTCCAAGAAGCAACTGTTAGTCATTCCAGTTAGGTTGGTGAGGGTTTTTTACCCTGAAATACACATCTGCACCGAATATTAAGACAAGTTAAAAGGGTAGTTTTCTGTGGTAGAAAACCCCCCCTGCATTGTTCCAATACGCAAAAGCACTTTCAGTCAATAAGCTTTCCATTTTATCCAGACAGTTTTCAACTGAAGTCAATGGGCAGATTGATAAAAACATttaattattatttgttttaaagTAAACATAAATATTTCACAT
>XM_036934097.1
AAGTCCCACCTGTAGGTGTGATCGCGTCGTCAGTCAGAGATAGGACTGCTACATAAAGTGGCGCAACAGACGTGATGACAGACACTCGTCCCTCGCTCTACTGCTGCGGTCAAAACAAAACTGACTGCGGTTGGTCCGGCGGAGGATGAATGAGGAGAGGTTTGATGATCCCATTTACAGCAGCTGCAATGGTCCAATGGGCTTCACCGAAGGAGACCGGGAATCCTTACGGACACCATGCAACCGAACTCACCTCTCAGGTTCCGAATGCTTAAGAAGACACTACATACTACTGCTGTGTGTGGTAGTAGTGGGGTGTACTGTGGCTGTCATAAGTCTGTTTGCCCAGAAAAACAATCTAATTGCACAGAGACAGCAGTCAAATATTGAAACCTCTGcggcagagagggaagagatgaagtCTCTGAAATCAGAGGACTACAGCGTTCTTCTAAATATGATTTTAAAGCAGGAAGGGTGGAAGTATATCAACTCCAGTTTGTACTACATCTCTACTGAGACCAAGTCCTGGGGTGAGAGCAGACCTTACTGCCAACGGAAGGGATTGGACCTGGTGACCATAAACAGCAAAGACGAAGAGGACTTTCTCCTTGAAGTGGTCCGTGCTAAGAAGTTGGATGTAGCCTGGATTGGTTTTTCTCCCAACAACACAAAGGAGATATCTACACGGGTGAAGAGAGGTGTGGGGTCAGAAGACGGTGCTCAGGAAGAGGACTGTGCTAAGCTTACGGTATACGAGACACCTGCAGTGAAAGAAGTAACCGGGAGACAATGTGGGACACAAAAATACTGTATTTGTGAAAAATACCTGGATGTCAAATACAATGTAAGCAAGAGAAACCGTTAACTTGTTCTTCTGAAAGGATTCGACTTTTTAAAATGGAGGGAACAACTGCTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTGCTAGCTTCAACTTCTTTTTAATGGAGGGAACAACTACTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTACTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTGCATTTTCCAAGAAGCAACTGTTAGTCATTCCAGTTAGGTTGGTGAGGGTTTTTTACCCTGAAATACACATCTGCACCGAATATTAAGACAAGTTAAAAGGGTAGTTTTCTGTGGTAGAAAACCCCCCCTGCATTGTTCCAATACGCAAAAGCACTTTCAGTCAATAAGCTTTCCATTTTATCCAGACAGTTTTCAACTGAAGTCAATGGGCAGATTGATAAAAACATttaattattatttgttttaaagTAAACATAAATATTTCACAT
>XM_036934099.1
GTAAAAATAAACAACTAATGGACTCGTTTTATGAATGCTTGGATCGTGAAACTGAAATAGATTGGTAGCTAGTTGGTGAGGCTTTTTGATTTATTTGCCAGTTAATTAACCTGAAGCTGGAATTCCCAAGTTGTTCGGTGCTTACCGCTCATGCCGGCGAGCAAGCGAAACAGACGGCTCGGCAGCGCATCAAGTGTGACGTTACACATCTGCCCCTAAACTCATAAATATAAATGGCTTTGCCCTCCGGCTGTCCTACGAAAGGAAATTTCCCATAAGGGACGCTAGTTGCATGGAGGATTTAGCAACGGTAACAAGCGAGCACGCTCATTTTTTTCAACACATATTAAGGACAATAGACGAAGTATGTTTCTGAACGCTGCACCAGGCTTCATTGTTGACAATATGACTGAGCGTCGAAGATTACCGTTCGATTTGAGCAGGGGCGCGCCACCCGCAGACGGCTTCGTCCGTCACCTTTACGGGCCATGGCCCGGTTTAACCCGGAGCATCTTAATCGAATTCCCTCGTTGGAAACCATGTGTACATATTGCATTGGTTCCGAATGCTTAAGAAGACACTACATACTACTGCTGTGTGTGGTAGTAGTGGGGTGTACTGTGGCTGTCATAAGTCTGTTTGCCCAGAAAAACAATCTAATTGCACAGAGACAGCAGTCAAATATTGAAACCTCTGcggcagagagggaagagatgaagtCTCTGAAATCAGAGGACTACAGCGTTCTTCTAAATATGATTTTAAAGCAGGAAGGGTGGAAGTATATCAACTCCAGTTTGTACTACATCTCTACTGAGACCAAGTCCTGGGGTGAGAGCAGACCTTACTGCCAACGGAAGGGATTGGACCTGGTGACCATAAACAGCAAAGACGAAGAGGACTTTCTCCTTGAAGTGGTCCGTGCTAAGAAGTTGGATGTAGCCTGGATTGGTTTTTCTCCCAACAACACAAAGGAGATATCTACACGGGTGAAGAGAGGTGTGGGGTCAGAAGACGGTGCTCAGGAAGAGGACTGTGCTAAGCTTACGGTATACGAGACACCTGCAGTGAAAGAAGTAACCGGGAGACAATGTGGGACACAAAAATACTGTATTTGTGAAAAATACCTGGATGTCAAATACAATGTAAGCAAGAGAAACCGTTAACTTGTTCTTCTGAAAGGATTCGACTTTTTAAAATGGAGGGAACAACTGCTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTGCTAGCTTCAACTTCTTTTTAATGGAGGGAACAACTACTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTACTAGCTTCAATGTTTCTTTTTAAATGGAGGGAACAACTGCATTTTCCAAGAAGCAACTGTTAGTCATTCCAGTTAGGTTGGTGAGGGTTTTTTACCCTGAAATACACATCTGCACCGAATATTAAGACAAGTTAAAAGGGTAGTTTTCTGTGGTAGAAAACCCCCCCTGCATTGTTCCAATACGCAAAAGCACTTTCAGTCAATAAGCTTTCCATTTTATCCAGACAGTTTTCAACTGAAGTCAATGGGCAGATTGATAAAAACATttaattattatttgttttaaagTAAACATAAATATTTCACATTAATTTCACGTAAAAACAACATTTAGTAAAACATTGTGTTTAGACCGGGGGGCGGATACAGCAGGGTAGgaacacacaccgtacacacaccgtacacacacacagcagggtaggaacacacaccgtacacacacacacacaca

Function

NR:

description
C-type lectin domain family 9 member A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934098.1 False 1301 mRNA 0.43 6 78984364 78994699
XM_036934097.1 False 1338 mRNA 0.43 5 78984366 78994699
XM_036934099.1 True 1779 mRNA 0.43 5 78985870 78994842

Neighbor

gene id symbol gene type direction distance location
LOC110516209 NA coding upstream 42009 78939438 ~ 78942355 (+)
LOC110513597 LOC107093492 coding upstream 48694 78885272 ~ 78937306 (+)
LOC118936788 LOC106591635 coding upstream 103168 78874786 ~ 78881196 (+)
LOC110534603 LOC106602125 coding upstream 167926 78805794 ~ 78816438 (+)
LOC118966658 NA coding upstream 196622 78786758 ~ 78787742 (+)
LOC118936789 NA coding downstream 129 78994971 ~ 78995813 (+)
LOC118936790 NA coding downstream 8848 79003589 ~ 79004205 (+)
LOC110515636 LOC105020871 coding downstream 28727 79023569 ~ 79065796 (+)
LOC110513572 LOC106596357 coding downstream 164665 79159507 ~ 79164674 (+)
LOC110513571 LOC106602128 coding downstream 172862 79167704 ~ 79171045 (+)
G927117 NA non-coding upstream 16642 78965254 ~ 78967722 (+)
G927105 NA non-coding upstream 53489 78929146 ~ 78930875 (+)
G927098 NA non-coding upstream 75843 78908122 ~ 78908521 (+)
G927080 LOC106610560 non-coding upstream 130199 78848904 ~ 78854165 (+)
G927124 NA non-coding downstream 5123 78999965 ~ 79001000 (+)
G927550 NA non-coding downstream 72782 79067624 ~ 79067968 (+)
G927551 NA non-coding downstream 73936 79068778 ~ 79069054 (+)
G927555 NA non-coding downstream 76112 79070954 ~ 79071306 (+)
G927061 LOC106602167 other upstream 196801 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 453763 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1259311 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1530449 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1688355 77293833 ~ 77296009 (+)
G927584 NA other downstream 205439 79200281 ~ 79202981 (+)
G927606 NA other downstream 286544 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 602803 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 732203 79727045 ~ 79782057 (+)

Expression


Co-expression Network