LOC118936790


Basic Information

Item Value
gene id LOC118936790
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79003589 ~ 79004205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034245.1
CATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGATTTGTGGCACAAATTCTGTGTATGCAAAAACGAGTATGCTGCCTGGagatctctctctttttccctccctaCT
>XR_005034246.1
CATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGATTTGTGGCACAAATTCTGTGTATGCAAAAACGAGTATGCTGCCTGGagatctctctctttttccctccctaCT
>TU1055049
AGCTGGACCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGATTTGTGGCACAAATTCTGTGTATGCAAAAACGAGTATGCTGCCTGGagatctctctctttttccctccctaCTCCCAACGTTCCATCCCTCGAGCA
>TU1055051
AGCTGGACCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGATTTGTGGCACAAATTCTGTGTATGCAAAAACGAGTATGCTGCCTGGagatctctctctttttccctccctaCTCCCAACGTTCCATCCCTCGAGCA
>TU1055054
AGCTGGACCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGCCCATGTCTAACTGTTAACATAGAGTTCCATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGATTTGTGGCACAAATTCTGTGTATGCAAAAACGAGTATGCTGCCTGGagatctctctctttttccctccctaCTCCCAACGTTCCATCCCTCGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034245.1 False 357 mRNA 0.41 3 79003690 79004182
XR_005034246.1 False 347 mRNA 0.41 3 79003690 79004182
TU1055049 False 365 lncRNA 0.42 4 79003589 79004205
TU1055051 False 326 lncRNA 0.42 4 79003589 79004205
TU1055054 True 394 lncRNA 0.42 3 79003589 79004205

Neighbor

gene id symbol gene type direction distance location
LOC118936789 NA coding upstream 7877 78994971 ~ 78995813 (+)
LOC110517676 NA coding upstream 8848 78984364 ~ 78994842 (+)
LOC110516209 NA coding upstream 61335 78939438 ~ 78942355 (+)
LOC110513597 LOC107093492 coding upstream 68020 78885272 ~ 78937306 (+)
LOC118936788 LOC106591635 coding upstream 122494 78874786 ~ 78881196 (+)
LOC110515636 LOC105020871 coding downstream 19387 79023569 ~ 79065796 (+)
LOC110513572 LOC106596357 coding downstream 155325 79159507 ~ 79164674 (+)
LOC110513571 LOC106602128 coding downstream 163522 79167704 ~ 79171045 (+)
LOC118936792 NA coding downstream 203684 79207866 ~ 79209040 (+)
LOC118936979 NA coding downstream 241152 79245334 ~ 79245497 (+)
G927124 NA non-coding upstream 2690 78999965 ~ 79001000 (+)
G927117 NA non-coding upstream 35968 78965254 ~ 78967722 (+)
G927105 NA non-coding upstream 72815 78929146 ~ 78930875 (+)
G927098 NA non-coding upstream 95169 78908122 ~ 78908521 (+)
G927550 NA non-coding downstream 63442 79067624 ~ 79067968 (+)
G927551 NA non-coding downstream 64596 79068778 ~ 79069054 (+)
G927555 NA non-coding downstream 66772 79070954 ~ 79071306 (+)
G927560 NA non-coding downstream 71461 79075643 ~ 79076371 (+)
G927562 NA non-coding downstream 90085 79094267 ~ 79094699 (+)
G927061 LOC106602167 other upstream 216127 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 473089 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1278637 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1549775 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1707681 77293833 ~ 77296009 (+)
G927584 NA other downstream 196099 79200281 ~ 79202981 (+)
G927606 NA other downstream 277204 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 593463 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 722863 79727045 ~ 79782057 (+)

Expression


Co-expression Network