LOC110515636 (LOC105020871)


Basic Information

Item Value
gene id LOC110515636
gene name LOC105020871
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79023569 ~ 79065796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934101.1
GTTGAATGATTACTTCCGGGCACACGGTCCACCCGCTAGCTCGTCGAAATCAAAATGTATGAAGTGGATATTTTTCCGCGCTTCAAGATAATGCAATAATTTATGACGACTTCTGCTGTtttaaactatatatatatattttgttgttgttcgTGTGCATTTACTACTATCCGGGTTGTTTCGTTAGCCAACTAGCTTAGCTGGAAAACAAGAGTTGCGATCTTCGTGAAAGACACTTTCTTACCGCTGGTTAAAGAAGATGTCTGCGGAAGAGGCGGCAGACAAAACAGCCCCGGCGGACGCGAGTGCGGGAGATGGCGGAGacgaggaagaagagtggctttACGGAGATGATGATGAGAGAGCTGATGAAGAAGAGGCCAAACTATCCGCTGCTGTCAGTGCACCTATTCCTGCTACTGAGTCAGAAGAGGCAGCTACTACAGGCAACGGAGTGGAAGCTCAGgagAAGGAGCCAGGAGATGATGACGACAGTGATAGCGACAGCgacgatgatgacgatgatgttCGTGTCACCATTGGAGACATCAAGACCGGAGCCCCACAGTACACAACGTATGGAGTGGCTCCTGTTAACCTGAACATAAAGACAGCGGGAGCCAGACCCTATGGAACAGGGAACAAGTTAAAGGGTGTGGATCTGGAGGCCCCGGGAAACATCAATGGAGTCCCGGTAGTGGAGGTGGACATGGAGACATTCGAGGAGAAACCCTGGAGGAAACCAGgtgctgacCTGTCTGACTACTTTAACTATGGGTTCAACGAGGACACGTGGAAGGGCTACTGTGACAAGCAGAAGAGGCTGAGGATGGGCCTGGAGGTCGTCAACATCTCCTCCACCACCAGCAaaatcactGTTCAGCAGGGCAGGACGGGGAATGAGAAGGAAGTGAGTTTACCCATCCACACGTCCAAACCTGACTTCCCCACTACAGCCAACATCTACAAGTCATCCATGAACACTACCAGGATCTCCCCCCCACAGTGGACTGCTCCCCCCGTCCAGGACATGTCCTACTATACGAAGACCAGTGGTACGATCGACGTGATTGGAGGAGGGACCGCTACCATCAGCAGAGTGGAGGGACGACGAAGACACAACCTGGAGGGAAACAAcatccagGTGATTTCGGAACACTCGTCGTCGGACGCTGAGCAAAACCCCAACAAGATGCCCCCCTTCTTCCCCCCCGGGCCCCTCCCCCCAAACATCCCTCCTCCCCCattccttccccctcctcccaaCGTCAGCCAGgctccccctctcatccccccaCCAAGAATACCTATGAATGTCCCTCCTCCTGgtttcCCTCCTCCCAGcggcccccctccctctctcatccccacCTTGGACAGCAGTGGGCATCCAGGTGGATATGATGTTCGTCCCGTTCCACCATACCCCTTCCCCACAGGTGGTTTCCCTCCTCCTATGACAGgtggCTACCCTCCTCCTATGCCAGGTGTGGTGTCTCCATGGCCTCCTATGATGGACCAGTCTAAACAGTGGGACTActaccctccagGACCGGGACCGGGACCAGGACCCAGACGGGAGGacaagagggagaaggagagagagagacccagggagagaccacatgagagggagagagagcgagagcacagCCCCTCCACTATGGCTTACAACAGTGACGAGGAGCGGTACCGCGGTTACCGGGAGTACCAGGCGGAGCGTGGCTACAGCGGCGGTGGTGACCGCGGAGGAGGTGACCGCGGAGGAGGGGAGCGTGGAGGCGTAGACCGTGGAGGTGACCGTGGAGGGGGGGAGCGTGGCGGTGACCGTGGGAGTGGTGGTGAGCGTGGTGGTGGAGGCGGGGAGCGTCACAGAGACAGGTCGAGCcgtgagaaggaggagagacacagagagagaagacacagagagaaggaggaggggagacacAAGTCATCACGCAGTAGCAGCAGGAGGAGACATGATAGTGAAGAAGGAGACGGTCACAGGAGACACAAACACAAGAAGAGCAAGAGGAGCAAGGAGGGCAAGGAACCTAGTGATGACATGGGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGAaaacaccctcctctccctctcctcatctctctccctctgtttccctctatacgtccctccatctttctctctctcctctctccctcagagcACTGTTGTAGTTGATCATGCTCAGAGGTCGTTGTTGTTTACCCGTTCCCTTCGTAGTCATGACGATCATAAACAACCCTCATCTTCTGTCATTTATTTTCGTCCCTCTATTTTCTTAACCAAACACCTCGCTGAAAGATGTCAATTTGTTGAATTAAAAAACAAGCTTTTGATAA
>XM_036934100.1
TTGAATGATTACTTCCGGGCACACGGTCCACCCGCTAGCTCGTCGAAATCAAAATGTATGAAGTGGATATTTTTCCGCGCTTCAAGATAATGCAATAATTTATGACGACTTCTGCTGTtttaaactatatatatatattttgttgttgttcgTGTGCATTTACTACTATCCGGGTTGTTTCGTTAGCCAACTAGCTTAGCTGGAAAACAAGAGTTGCGATCTTCGTGAAAGACACTTTCTTACCGCTGGTTAAAGAAGATGTCTGCGGAAGAGGCGGCAGACAAAACAGCCCCGGCGGACGCGAGTGCGGGAGATGGCGGAGacgaggaagaagagtggctttACGGAGATGATGATGAGAGAGCTGATGAAGAAGAGGCCAAACTATCCGCTGCTGTCAGTGCACCTATTCCTGCTACTGAGTCAGAAGAGGCAGCTACTACAGGCAACGGAGTGGAAGCTCAGgagAAGGAGCCAGGAGATGATGACGACAGTGATAGCGACAGCgacgatgatgacgatgatgttCGTGTCACCATTGGAGACATCAAGACCGGAGCCCCACAGTACACAACGTATGGAGTGGCTCCTGTTAACCTGAACATAAAGACAGCGGGAGCCAGACCCTATGGAACAGtAGGGAACAAGTTAAAGGGTGTGGATCTGGAGGCCCCGGGAAACATCAATGGAGTCCCGGTAGTGGAGGTGGACATGGAGACATTCGAGGAGAAACCCTGGAGGAAACCAGgtgctgacCTGTCTGACTACTTTAACTATGGGTTCAACGAGGACACGTGGAAGGGCTACTGTGACAAGCAGAAGAGGCTGAGGATGGGCCTGGAGGTCGTCAACATCTCCTCCACCACCAGCAaaatcactGTTCAGCAGGGCAGGACGGGGAATGAGAAGGAAGTGAGTTTACCCATCCACACGTCCAAACCTGACTTCCCCACTACAGCCAACATCTACAAGTCATCCATGAACACTACCAGGATCTCCCCCCCACAGTGGACTGCTCCCCCCGTCCAGGACATGTCCTACTATACGAAGACCAGTGGTACGATCGACGTGATTGGAGGAGGGACCGCTACCATCAGCAGAGTGGAGGGACGACGAAGACACAACCTGGAGGGAAACAAcatccagGTGATTTCGGAACACTCGTCGTCGGACGCTGAGCAAAACCCCAACAAGATGCCCCCCTTCTTCCCCCCCGGGCCCCTCCCCCCAAACATCCCTCCTCCCCCattccttccccctcctcccaaCGTCAGCCAGgctccccctctcatccccccaCCAAGAATACCTATGAATGTCCCTCCTCCTGgtttcCCTCCTCCCAGcggcccccctccctctctcatccccacCTTGGACAGCAGTGGGCATCCAGGTGGATATGATGTTCGTCCCGTTCCACCATACCCCTTCCCCACAGGTGGTTTCCCTCCTCCTATGACAGgtggCTACCCTCCTCCTATGCCAGGTGTGGTGTCTCCATGGCCTCCTATGATGGACCAGTCTAAACAGTGGGACTActaccctccagGACCGGGACCGGGACCAGGACCCAGACGGGAGGacaagagggagaaggagagagagagacccagggagagaccacatgagagggagagagagcgagagcacagCCCCTCCACTATGGCTTACAACAGTGACGAGGAGCGGTACCGCGGTTACCGGGAGTACCAGGCGGAGCGTGGCTACAGCGGCGGTGGTGACCGCGGAGGAGGTGACCGCGGAGGAGGGGAGCGTGGAGGCGTAGACCGTGGAGGTGACCGTGGAGGGGGGGAGCGTGGCGGTGACCGTGGGAGTGGTGGTGAGCGTGGTGGTGGAGGCGGGGAGCGTCACAGAGACAGGTCGAGCcgtgagaaggaggagagacacagagagagaagacacagagagaaggaggaggggagacacAAGTCATCACGCAGTAGCAGCAGGAGGAGACATGATAGTGAAGAAGGAGACGGTCACAGGAGACACAAACACAAGAAGAGCAAGAGGAGCAAGGAGGGCAAGGAACCTAGTGATGACATGGGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGAaaacaccctcctctccctctcctcatctctctccctctgtttccctctatacgtccctccatctttctctctctcctctctccctcagagcACTGTTGTAGTTGATCATGCTCAGAGGTCGTTGTTGTTTACCCGTTCCCTTCGTAGTCATGACGATCATAAACAACCCTCATCTTCTGTCATTTATTTTCGTCCCTCTATTTTCTTAACCAAACACCTCGCTGAAAGATGTCAATTTGTTGAATTAAAAAACAAGCTTTTGATAA
>TU1055067
GTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTATCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTACAGACTCAACAGTTAGAatgtgtggtgtggtgatgtcaTAGTCATAATGTGGTATAGACTCAACAGGTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTGGAATGTATCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACACttagaatgtgtctgtgtgtgtcttaacagtaacactgtgtgtgtgcaggtttcCCTCCTCCCAGcggcccccctccctctctcatccccacCTTGGACAGCAGTGGGCATCCAGGTGGATATGATGTTCGTCCCGTTCCACCATACCCCTTCCCCACAGGTGGTTTCCCTCCTCCTATGACAGgtggCTACCCTCCTCCTATGCCAGGTGTGGTGTCTCCATGGCCTCCTATGATGGACCAGTCTAAACAGTGGGACTActaccctccagGACCGGGACCGGGACCAGGACCCAGACGGGAGGacaagagggagaaggagagagagagacccagggagagaccacatgagagggagagagagcgagagcacagCCCCTCCACTATGGCTTACAACAGTGACGAGGAGCGGTACCGCGGTTACCGGGAGTACCAGGCGGAGCGTGGCTACAGCGGCGGTGACCGTGGAGGGGGGGAGCGTGGCGGTGACCGTGGGAGTGGTGGTGAGCGTGGTGGTGGAGGCGGGGAGCGTCACAGAGACAGGTCGAGCcgtgagaaggaggagagacacagagagagaagacacagagagaaggaggaggggagacacAAGTCATCACGCAGTAGCAGCAGGAGGAGACATGATAGTGAAGAAGGAGACGGTCACAGGAGACACAAACACAAGAAGAGCAAGAGGAGCAAGGAGGGCAAGGAACCTAGTGATGACATGGGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGAaaacaccctcctctccc

Function

NR:

description
pre-mRNA 3'-end-processing factor FIP1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934101.1 False 2562 mRNA 0.54 19 79023569 79065796
XM_036934100.1 False 2564 mRNA 0.54 19 79023570 79065796
TU1055067 True 1357 TUCP 0.52 8 79052491 79065547

Neighbor

gene id symbol gene type direction distance location
LOC118936790 NA coding upstream 19387 79003589 ~ 79004205 (+)
LOC118936789 NA coding upstream 27756 78994971 ~ 78995813 (+)
LOC110517676 NA coding upstream 28727 78984364 ~ 78994842 (+)
LOC110516209 NA coding upstream 81214 78939438 ~ 78942355 (+)
LOC110513597 LOC107093492 coding upstream 87899 78885272 ~ 78937306 (+)
LOC110513572 LOC106596357 coding downstream 93711 79159507 ~ 79164674 (+)
LOC110513571 LOC106602128 coding downstream 101908 79167704 ~ 79171045 (+)
LOC118936792 NA coding downstream 142070 79207866 ~ 79209040 (+)
LOC118936979 NA coding downstream 179538 79245334 ~ 79245497 (+)
LOC118937074 NA coding downstream 181620 79247416 ~ 79247579 (+)
G927109 NA non-coding upstream 1805 78952006 ~ 79021764 (+)
G927124 NA non-coding upstream 22569 78999965 ~ 79001000 (+)
G927117 NA non-coding upstream 55847 78965254 ~ 78967722 (+)
G927550 NA non-coding downstream 1828 79067624 ~ 79067968 (+)
G927551 NA non-coding downstream 2982 79068778 ~ 79069054 (+)
G927555 NA non-coding downstream 5158 79070954 ~ 79071306 (+)
G927560 NA non-coding downstream 9847 79075643 ~ 79076371 (+)
G927562 NA non-coding downstream 28471 79094267 ~ 79094699 (+)
G927061 LOC106602167 other upstream 236006 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 492968 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1298516 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1569654 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1727560 77293833 ~ 77296009 (+)
G927584 NA other downstream 134485 79200281 ~ 79202981 (+)
G927606 NA other downstream 215590 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 531849 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 661249 79727045 ~ 79782057 (+)
G928206 NA other downstream 961206 80027002 ~ 80028219 (+)

Expression


Co-expression Network