LOC118937050


Basic Information

Item Value
gene id LOC118937050
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79155529 ~ 79156778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034451.1
atacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg
>TU1055730
aaaccctgttcaatatgatgtggtattatcagtagtagaagtggtaaccgtgagtcaaacacctttgtcctggaaggagtactcctctaccaacgtgtacaactcatacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgatcttgatgttaaaaaatAATTTAGGGACATATTTAATTCCATGTGTTTTAACACGCTCTTCTTttgagtttcgtgttgagaaggacatttgtcaacattttacatgttcttatcagatgaatggctatagaatgtagggtctgtttatgagtcaactaaggcctcagagatacattttgtcttctgataacccggatgtgtgtgatatgttattgtagcactggtgattatgcctgtcatgtcctgataatgtcaaggaaaaggcctacttgtgaatggatcattttgtgccctcacGACGTAATCTGGATTGAGGTCTTTCATTTGTTAGaatattaaatcatttataggagagtttgtaatttaagaccacagtacatgtcaaccattaccatgccacagaaatttccctggtcaactattagcatgacaacagacatttccctggtcaaccattaccatgccacagtcattgccctggtcaaccattaccatgacaacagacatttctctgatcaaccattaccttgacaacagacatttccctggtcaaccattaccttgacaacagacatttccctggtcaaccattaccttgacaacagacatttccctggtcaaccattaccattccacagacatgtccctggtctacaatgccacagacatttccctggtcaaccattaccatgccacagacatgtccctggtccacttatttcctgatgaaatcagtcaataagatggattctgttgttccaagatgcagatccattccacagacatttctgcaggttttttttttttgcagtgagaatgtgtagtgaggtattctgccaaaaatgtatttaggcatattaaaacacttcagtttaaccctgatcgcgagtatcatcctgtcaatttacagatacaattacaaatacgagtatggccatgtcactgtacatagatctttctattttcatgttctactgtgt

Function

NR:

description
PREDICTED: calcium-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034451.1 False 164 mRNA 0.56 1 79156510 79156673
TU1055730 True 1250 lncRNA 0.41 1 79155529 79156778

Neighbor

gene id symbol gene type direction distance location
LOC118937039 NA coding downstream 1637 79154710 ~ 79154873 (-)
LOC118937028 NA coding downstream 3436 79152911 ~ 79153074 (-)
LOC118937017 NA coding downstream 5235 79151112 ~ 79151275 (-)
LOC118937006 NA coding downstream 7034 79149313 ~ 79149476 (-)
LOC118936951 NA coding downstream 8959 79147388 ~ 79147551 (-)
LOC118937062 NA coding upstream 1601 79158274 ~ 79158437 (-)
LOC110513570 NA coding upstream 18532 79175205 ~ 79183563 (-)
LOC118936937 NA coding upstream 30562 79186013 ~ 79187776 (-)
LOC110511088 LOC106592313 coding upstream 56122 79212795 ~ 79222203 (-)
LOC110511089 LOC106591771 coding upstream 65615 79222288 ~ 79237169 (-)
LOC118936994 NA non-coding downstream 10676 79144484 ~ 79145834 (-)
LOC118936950 NA non-coding downstream 17935 79137898 ~ 79138575 (-)
LOC118936946 NA non-coding downstream 25762 79130367 ~ 79130748 (-)
G927640 NA non-coding downstream 34101 79122132 ~ 79122409 (-)
LOC118936945 NA non-coding downstream 36642 79119136 ~ 79119868 (-)
G927652 NA non-coding upstream 13690 79170363 ~ 79170867 (-)
G927658 NA non-coding upstream 15874 79172547 ~ 79172800 (-)
G927659 NA non-coding upstream 16142 79172815 ~ 79173031 (-)
G927647 NA non-coding upstream 35274 79191947 ~ 79194251 (-)
LOC110497238 LOC106610518 other downstream 646579 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 682451 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 711369 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 714528 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 722414 78382269 ~ 78434096 (-)
G927654 LOC106591987 other upstream 61842 79218515 ~ 79222867 (-)
G927673 NA other upstream 118020 79274693 ~ 79281790 (-)
G927893 NA other upstream 215443 79372116 ~ 79372872 (-)
G927948 LOC106602109 other upstream 399297 79554714 ~ 79559828 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033636 NA non-coding NC_007118.7 CM002891.2 21820301 ~ 21831281 (+)