LOC110513572 (LOC106596357)


Basic Information

Item Value
gene id LOC110513572
gene name LOC106596357
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79159507 ~ 79164674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934104.1
TTGAATGCGATTTTACTGCTAAGAAAAacattcaaaataaaagtcctcgTCAAACTTCCCGTTCCATGGCTACTACTACTTCCGGGTCAGCTTCGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGAGCTCTGACGTTGTCGTCCAGGTTTGGATCTCTACCTAAAGTGGCCTTTGCGGGGCTGTGTGGCTACCTGGCAGGGAAGATGTCGTACATGAAACACTGTCAGGAGAAGTTCAAGAGGCTGGAGCACTCCCCTCTGGGAGAAGCACTGAGACAGAGGACTAGACCCAACGCACagTCGTCTCAGGGCCCCCAGTCAGAGATGAGTGACCCCGACCAGGTGACCTTTGACCCCATGTTCCAGGCCTCTGACCCCCAgagccagGTCCCACCCAACGCCAGAGACTATGGAGACGGTGACGCCCCCAACGCGGCACAGACCAGCCGCACTGCTGCAGACATCGACTACAACATGCCAGCCCAGTCGTTCCTGGATGACGAGGAGCCCAGGAGGAAGCCAATCATATACGAGGACTTCTAACCTTTACCCTCAAACCTCTGCCCCCCCTCCAGCCCAGTCGTTCCTGGATGACGAGGAGCCCAGGAGGAAGC
>XM_036934102.1
ACTGCTAAGAAAAacattcaaaataaaagtcctcgTCAAACTTCCCGTTCCATGGCTACTACTACTTCCGGGTCAGCTTCGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGAGCTCTGACGTTGTCGTCCAGGTTTGGATCTCTACCTAAAGTGGCCTTTGCGGGGCTGTGTGGCTACCTGGCAGGGAAGATGTCGTACATGAAACACTGTCAGGAGAAGTTCAAGAGGCTGGAGCACTCCCCTCTGGGAGAAGCACTGAGACAGAGGACTAGACCCAACGCACagTCGTCTCAGGGCCCCCAGTCAGAGATGAGTGACCCCGACCAGGTGACCTTTGACCCCATGTTCCAGGCCTCTGACCCCCAgagccagGTCCCACCCAACGCCAGAGACTATGGAGACGGTGACGCCCCCAACGCGGCACAGACCAGCCGCACTGCTGCAGACATCGACTACAACATGCCAGCCCAGTCGTTCCTGGATGACGAGGAGCCCAGGAGGAAGCCCATCATGTACGAGGACCTAAGGAACAAGAACCGAGAAACCTATGAGGTCACGCTTACCCAGAAGGCTGAGACGCTGCTCAAACCAGAGTCTGACCGGCAAGGGAGGACCGCCCACAAGAAGGACGcAGGGAAGAAGAACGTCTACGGAGACAGCTTGGAGGAGTGAGTCTCTCCATCTGTTATCACTAACAGTGCTGATTGGACTACAATACCCACAACCCCCGTGTGGTTGCTTTGCTATTATTTACGTCTCAATTTATGAATCTATGGGATtatctcaattgcatttccttgattccttgcgtcctctctcctcaaaacccattggatgaggaGGTCAGGGgggtaggcaggtagcctaggggtaaagagcgttgggccagtaaccaaaaggttgctggttcagatCTCAGAACCAACTCTGTGAAAAATCAGTCgacgtgtccttgagcaaggcacttaaccctaattgctctcgATAAGTGTCTGCTTAAttacttaaatatattttcctaAATTAGGGCCCCCCCTTGCAAAGAATCAAGGAAATAAGATTCTCCCATTGTCTGTCTGATTCTGTCTTTTGAAAACATGTCAATAAACCCAAATAGGTTTTGAAATTGCA
>XM_036934103.1
CTGCTAAGAAAAacattcaaaataaaagtcctcgTCAAACTTCCCGTTCCATGGCTACTACTACTTCCGGGTCAGCTTCGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGAGCTCTGACGTTGTCGTCCAGGTTTGGATCTCTACCTAAAGTGGCCTTTGCGGGGCTGTGTGGCTACCTGGCAGGGAAGATGTCGTACATGAAACACTGTCAGGAGAAGTTCAAGAGGCTGGAGCACTCCCCTCTGGGAGAAGCACTGAGACAGAGGACTAGACCCAACGCACagTCGTCTCAGGGCCCCCAGTCAGAGATGAGTGACCCCGACCAGGTGACCTTTGACCCCATGTTCCAGGCCTCTGACCCCCAgagccagGTCCCACCCAACGCCAGAGACTATGGAGACGGTGACGCCCCCAACGCGGCACAGACCAGCCGCACTGCTGCAGACATCGACTACAACATGCCAGCCCAGTCGTTCCTGGATGACGAGGAGCCCAGGAGGAAGCCCATCATGTACGAGGACCTAAGGAACAAGAACCGAGAAACCTATGAGGTCACGCTTACCCAGAAGGCTGAGACGCTGCTCAAACCAGAGTCTGACCGGCAAGGGAGGACCGCCCACAAGAAGGACGGGAAGAAGAACGTCTACGGAGACAGCTTGGAGGAGTGAGTCTCTCCATCTGTTATCACTAACAGTGCTGATTGGACTACAATACCCACAACCCCCGTGTGGTTGCTTTGCTATTATTTACGTCTCAATTTATGAATCTATGGGATtatctcaattgcatttccttgattccttgcgtcctctctcctcaaaacccattggatgaggaGGTCAGGGgggtaggcaggtagcctaggggtaaagagcgttgggccagtaaccaaaaggttgctggttcagatCTCAGAACCAACTCTGTGAAAAATCAGTCgacgtgtccttgagcaaggcacttaaccctaattgctctcgATAAGTGTCTGCTTAAttacttaaatatattttcctaAATTAGGGCCCCCCCTTGCAAAGAATCAAGGAAATAAGATTCTCCCATTGTCTGTCTGATTCTGTCTTTTGAAAACATGTCAATAAACCCAAATAGGTTTTGAAATTGCA
>TU1055643
CGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGAGCTCTGACGTTGTCGTCCAGGTTTGGATCT
>TU1055644
CGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGTAGGCCCACCTCCCACCACCCATCATCACTATATCTTAGTGTACGATAGTGTATGATCTAGGAGAGCATCTCAATACTCTGATATAGAATAGTAGCTTCATGTTAGAGATACCTTAATGACAAGTGGCGTCCAAGATGATAGTGTATGATCTAGGAGAGCATCTCAATACTCTGATATAGAATAGTAGCTTCCGGTTAGAGATACCTTAATGACACGTGGCGTCCAAGATGAACGTGCAGAGACGACAGCCAAAAAGATGGAGGTGTTTTCTGCAGAGGTCTGCAGATGTATCACACCTATACATTTTTTTGATTGTCTGCAACCCACCTGGTCGACACTTACCTTTTCTACCATGAATTGGACTAGTGACATCAAGACCGACTCTCCTGTGTTCCTTCCCGTCTTAACCCTGATGACATCAAGACTGACTCTCCTGTGTTCCTTCCTGTGTTTTAGGAGCTCTGACGTTGTCGTCCAGGTTTGGATCT
>TU1055645
CGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGTAGGCCCACCTCCCA

Function

NR:

description
OCIA domain-containing protein 1-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934104.1 False 964 mRNA 0.52 8 79159507 79163060
XM_036934102.1 False 1482 mRNA 0.49 9 79159521 79164674
XM_036934103.1 False 1478 mRNA 0.49 9 79159522 79164674
TU1055643 False 413 lncRNA 0.46 4 79159600 79160920
TU1055644 False 871 lncRNA 0.45 3 79159600 79160920
TU1055645 True 397 lncRNA 0.46 3 79159600 79160446

Neighbor

gene id symbol gene type direction distance location
LOC110515636 LOC105020871 coding upstream 93711 79023569 ~ 79065796 (+)
LOC118936790 NA coding upstream 155325 79003589 ~ 79004205 (+)
LOC118936789 NA coding upstream 163694 78994971 ~ 78995813 (+)
LOC110517676 NA coding upstream 164665 78984364 ~ 78994842 (+)
LOC110516209 NA coding upstream 217152 78939438 ~ 78942355 (+)
LOC110513571 LOC106602128 coding downstream 3030 79167704 ~ 79171045 (+)
LOC118936792 NA coding downstream 43192 79207866 ~ 79209040 (+)
LOC118936979 NA coding downstream 80660 79245334 ~ 79245497 (+)
LOC118937074 NA coding downstream 82742 79247416 ~ 79247579 (+)
LOC118937085 NA coding downstream 84828 79249502 ~ 79249665 (+)
G927566 NA non-coding upstream 13829 79144482 ~ 79145678 (+)
G927564 NA non-coding upstream 41707 79117264 ~ 79117800 (+)
G927562 NA non-coding upstream 64808 79094267 ~ 79094699 (+)
G927560 NA non-coding upstream 83136 79075643 ~ 79076371 (+)
G927555 NA non-coding upstream 88201 79070954 ~ 79071306 (+)
G927571 NA non-coding downstream 891 79165565 ~ 79166163 (+)
G927572 NA non-coding downstream 8856 79173530 ~ 79173863 (+)
G927579 NA non-coding downstream 28352 79193026 ~ 79194260 (+)
LOC118937004 LOC106592095 non-coding downstream 54148 79218822 ~ 79318667 (+)
G927061 LOC106602167 other upstream 371944 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 628906 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1434454 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1705592 77360360 ~ 77632808 (+)
G927584 NA other downstream 35607 79200281 ~ 79202981 (+)
G927606 NA other downstream 116712 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 432971 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 562371 79727045 ~ 79782057 (+)
G928206 NA other downstream 862328 80027002 ~ 80028219 (+)

Expression


Co-expression Network