LOC110513571 (LOC106602128)


Basic Information

Item Value
gene id LOC110513571
gene name LOC106602128
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79167704 ~ 79171045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934105.1
TCCGGTTTCAGGGCACTGCGGCGGATGTTGATATTCTGTTTTGGAGACCACAACCAGAGTTAGCTAGCGAGCTTTCGTCGTTGCcggagttttttttgttgttagttgttgtttGGTTGTTGTCTGACTTTTTTAAAATCGTTTTTCAACCGGGGGAAGGAACCCACTCCCCAAACGACGGCACCGTGTCTCTCCCGGCGCCTCACCGGGGAAACGCGAGGCCGAGTCGTGCGATGATGGAGGACTTCGACGAGAtctacgaggaggaggaggaggaagaggaggacgaggagagggCCGCGGAGGAACAGCTGTTAAAGTACGCTCCAGACCCGGTGGTCGTCCGAGGATCTGGCCACGTCACTGTGTTTGGACTCAGTAACAAGTTTGAGTCAGAGTTCCCATCGGCACTTACAGGGAAGGTGGCGCCAGAGGAGTTCAAGGCCAGTATAAACCGTGTTAACGGCTGTCTGAAGAAGACGCTGCCAGTGAATGTGCGTTGGCTGCTGTGTGGCTGTCTCTGTTGCTGCTGTACACTGGGCTTCAGTCTCTGGCCCGTCATCTGTCTGAGCAAAAGgacacaGAGATCCATGGAGAAGCTGTTGGATTGGGAGAACAGCAGACTGTACCACAAGctGTGTTTGCATTGGAGGCTGAGCAAGAGGAAGTGTGAAACCAACAACATGATGGAAtatgtaATCCTGATAGAGTTCCTACCCAAGATCCCCATTTTCAGACCGGACTAGCTCTCCGCAGCCCCACCCACATCCTCCCGTGGTGCCTCTCTTCACTCGGCCCAGTCACCTCTCCAAAAtggcctcctctttcctcccctaaCCAGGCCCATACCCCTAAAACAAAACCACCATTTAATGTTTACTGGACATTATCTAACTTCTCTGTCTAGCCCCTCTATATACCCAGAAAACACCTGTTTACACCCTAAAGCCCCTCCCCTTCTCTGATGTCAACCTTCGACCCCAGATCTGTTGGAGGAGACGTGGCCTTTTGACTGTCATCGGTCTGTGGGTCATCATGGGAGACCCAGCTCAGAAAGGGTGTAAACGGTACCATAGAACTGTGGCACTGGAGAAAGTGGACTCCTAATTTTGGACCTGCACTGATGGACCTCCTCTTCACAGCCCTTCCCTGTACACGAGGCACAATCTTTACTCAAGATTTATACCCCCGTTATATTGTACCCCAACCTGAACTATGAGACACTCTGTGCTGTTGGAACAGTTGATCTTATACTCTGTTCTAGAACCTCTGTGGAACCGCTGAGGTGACAATCAATGGATTAGCTACGGAACTTCTACAGAACTTCAATGGAACTAATATAGAACATTGACAGAACTTCAATGGATTAGCAAACGGAACGGCTATGGAACTGACAGAACTTCATTGGAACAGCTATGGAACTGACAGAACAGCTATGGAACTGACAGAACATTAGAACAGCTATGGAACTCCCAACGGAACgtcattgggctcccgagtggcacagcgttctaacacactgcatctcagtgctaagaggcgtcactgcagtacctggttcgatttcaggctgcatcacatccggctgtgattgggagtcccacagggcggcgcacaattggcccagcgtcgtccggggtaggccgtcattgtaaataataatttgttctttaaatgacttgcctagttaaataaaggttaaatacaaatggAA
>TU1055627
ACGGTACCATAGAACTGTGGCACTGGAGAAAGTGGACTCCTAATTTTGGACCTGCACTGATGGACCTCCTCTTCACAGCCCTTCCCTGTACACGAGGCACAATCTTTACTCAAGATTTATACCCCCGTTATATTGTACCCCAACCTGAACTATGAGACACTCTGTGCTGTTGGAACAGTTGATCTTATACTCTGTTCTAGAACCTCTGTGGAACCGCTGAGGTGACAATCAATGGATTAGCTACGGAACTTCTACAGAACTTCAATGGAACTAATATAGAACATTGACAGAACTTCAATGGATTAGCAAACGGAACAGCTATGGAACTGACAGAACAGCTATGGAACTGACAGAACATTAGAACAGCTATGGAACTCCCAACGGAACgtcattgggctcccgagtggcacagcgttctaacacactgcatctcagtgctaagagg
>TU1055628
ACGGTACCATAGAACTGTGGCACTGGAGAAAGTGGACTCCTAATTTTGGACCTGCACTGATGGACCTCCTCTTCACAGCCCTTCCCTGTACACGAGGCACAATCTTTACTCAAGATTTATACCCCCGTTATATTGTACCCCAACCTGAACTATGAGACACTCTGTGCTGTTGGAACAGTTGATCTTATACTCTGTTCTAGAACCTCTGTGGAACCGCTGAGGTGACAATCAATGGATTAGCTACGGAACTTCTACAGAACTTCAATGGAACTAATATAGAACATTGACAGAACTTCAATGGATTAGCAAACGGAACAGCTATGGAACTGACAGAACAGCTATGGAACTGACAGAACATTAGAACAGCTATGGAACTCCCAACGGAACgtcattgggctcccgagtggcacagcgttctaacacactgcatctcagtgctaagaggcgtcactgcagtacctggttcgatttcaggctgcatcacatccggctgtgattgggagtcccacagggcggcgcacaattggcccagcgtcgtccggggtaggccgtcattgtaaataataatttgttctttaaatgacttgcctagttaaataaaggttaaatacaaatggAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934105.1 False 1714 mRNA 0.50 6 79167704 79171045
TU1055627 False 445 lncRNA 0.46 2 79170396 79170871
TU1055628 True 619 lncRNA 0.46 2 79170396 79171045

Neighbor

gene id symbol gene type direction distance location
LOC110513572 LOC106596357 coding upstream 3030 79159507 ~ 79164674 (+)
LOC110515636 LOC105020871 coding upstream 101908 79023569 ~ 79065796 (+)
LOC118936790 NA coding upstream 163522 79003589 ~ 79004205 (+)
LOC118936789 NA coding upstream 171891 78994971 ~ 78995813 (+)
LOC110517676 NA coding upstream 172862 78984364 ~ 78994842 (+)
LOC118936792 NA coding downstream 36821 79207866 ~ 79209040 (+)
LOC118936979 NA coding downstream 74289 79245334 ~ 79245497 (+)
LOC118937074 NA coding downstream 76371 79247416 ~ 79247579 (+)
LOC118937085 NA coding downstream 78457 79249502 ~ 79249665 (+)
LOC118937094 NA coding downstream 80543 79251588 ~ 79251751 (+)
G927571 NA non-coding upstream 1541 79165565 ~ 79166163 (+)
G927566 NA non-coding upstream 22026 79144482 ~ 79145678 (+)
G927564 NA non-coding upstream 49904 79117264 ~ 79117800 (+)
G927562 NA non-coding upstream 73005 79094267 ~ 79094699 (+)
G927572 NA non-coding downstream 2485 79173530 ~ 79173863 (+)
G927579 NA non-coding downstream 21981 79193026 ~ 79194260 (+)
LOC118937004 LOC106592095 non-coding downstream 47777 79218822 ~ 79318667 (+)
LOC118936978 NA non-coding downstream 104970 79276005 ~ 79292617 (+)
G927607 NA non-coding downstream 106979 79278024 ~ 79325667 (+)
G927061 LOC106602167 other upstream 380141 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 637103 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1442651 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1713789 77360360 ~ 77632808 (+)
G927584 NA other downstream 29236 79200281 ~ 79202981 (+)
G927606 NA other downstream 110341 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 426600 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 556000 79727045 ~ 79782057 (+)
G928206 NA other downstream 855957 80027002 ~ 80028219 (+)

Expression


Co-expression Network