LOC110513570


Basic Information

Item Value
gene id LOC110513570
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79175205 ~ 79183563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934106.1
agtcctgtgttctgctttagtaatataaacacagtctcaaagccaggtgtgtagtgaccaaccattcatactgggatatagacagtcctgtgttctgctttagtaatataaacacagtcTCAAAGCCAGGTGTGTACTGACCAAGCATTCATACTGGGATATAGGCAGTCCTGTGTTCTGCTTGTAGTCATGCAGGATTTTAGCTGGTGTCATATTTTGTCAATACAGTTTAATTGATAAATAACCAGCATTTCATGTAACATTGAATAAATACATTAGATGAGTTACTTTGGTTaatgggccagtttcccagacacagattaagtatAGTCCTGGACCTTAAAGAACTTTCTATTGAAACTTCCATTGAGTCCAGCACTAGACtcaatctgtgtccaggaaacaggCCCCATATGTATTACTGACATGCTTGTCCTTGTTCAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACGCACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTGGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGCAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTTACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCGCTCTGATACTGAGATTACTGTCTTGGAACGTAGATGTCCACTGTGAGCTgatgctctatctgacagtgaaAGGGGAAACATTAATTTCTCGCCTGTACCTGTTCCCATGGAACCCTGGCCAAATACAGGCGGTGGAACTACAGGAGAAGTCTCACGGGTCTTCAAGGATTCTCATCTCCAGACCAGAGCAGTCCTTCAAACTATATAGTTTCTTCAGACTGAacattccctgttctacctcCATCAATCCACAGaAGATTCATCTCATACAAAGAGACACCACACCAAGCTTTTTCAAGGCGATCGTGAAAATAACAGGGATTGACATTGAGATGGAGTTATTCGGTGATGATGAGAGGACAGCATGGAAAGAGAAAGTATCACGATATGAATACATCACTGACACCTGTTCAACAAGTGCTGTGTCGGGGGCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTGCTGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTCAAACAAGTATCAAGACCTGTCCTGAATGAACTGCTGGACAGACTCCTGCAACACACAGTCATCCACCAGGAGGAAATGGAGTCAGTGAAGGTGATCGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCATGTTCCAGGATGATCAACCTTCTTGGGGAGCTGGACCCCAATCTTTGGTCACAGCTTCAGAtcagtgttggggtaccaaccgaatggtagaatggatagtaacagtgttggggtaccaaccgaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagt
>XM_036934109.1
acagtcctgtgttctgctttagtaatataaacacagtctcaaagccaggtgtgtagtgaccaaccattcatactgggatatagacagtcctgtgttctgctttagtaatataaacacagtcTCAAAGCCAGGTGTGTACTGACCAAGCATTCATACTGGGATATAGGCAGTCCTGTGTTCTGCTTGTAGTCATGCAGGATTTTAGCTGGTGTCATATTTTGTCAATACAGTTTAATTGATAAATAACCAGCATTTCATGTAACATTGAATAAATACATTAGATGAGTTACTTTGGTTaatgggccagtttcccagacacagattaagtatAGTCCTGGACCTTAAAGAACTTTCTATTGAAACTTCCATTGAGTCCAGCACTAGACtcaatctgtgtccaggaaacaggCCCCATATGTATTACTGACATGCTTGTCCTTGTTCAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACGCACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTGGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGCAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTTACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCGCTCTGATACTGAGATTACTGTCTTGGAACGTAGATGTCCACTGTGAGCTgatgctctatctgacagtgaaAGGGGAAACATTAATTTCTCGCCTGTACCTGTTCCCATGGAACCCTGGCCAAATACAGGCGGTGGAACTACAGGAGAAGTCTCACGGGTCTTCAAGGATTCTCATCTCCAGACCAGAGCAGTCCTTCAAACTATATAGTTTCTTCAGACTGAacattccctgttctacctcCATCAATCCACAGATTCATCTCATACAAAGAGACACCACACCAAGCTTTTTCAAGGCGATCGTGAAAATAACAGGGATTGACATTGAGATGGAGTTATTCGGTGATGATGAGAGGACAGCATGGAAAGAGAAAGTATCACGATATGAATACATCACTGACACCTGTTCAACAAGTGCTGTGTCGGGGGCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTGCTGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTCAAACAAGTATCAAGACCTGTCCTGAATGAACTGCTGGACAGACTCCTGCAACACACAGTCATCCACCAGGAGGAAATGGAGTCAGTGAAGGTGATCGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCATGTTCCAGGATGATCAACCTTCTTGGGGAGCTGGACCCCAATCTTTGGTCACAGCTTCAGAtcagtgttggggtaccaaccgaatggtagaatggatagtaacagtgttggggtaccaaccgaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagt
>XM_036934107.1
cacagtggatgtcgagggtgcaacaggtcagcacctcaggagtaaatgtcagttggcttttcatagccgatcattcagagtatctctaccgctcctgctgtctctagagggTTGAAAACAGCAAGAGTCCGGCACAGTTTCAAAGCCAGgtgtgtagtgaccaaccattcatactgggatatagacagtcctgtgttctgctttagtaatataaacacagtcTCAAAGCCAGGTGTGTACTGACCAAGCATTCATACTGGGATATAGGCAGTCCTGTGTTCTGCTTGTAGTCATGCAGGATTTTAGCTGGTGTCATATTTTGTCAATACAGTTTAATTGATAAATAACCAGCATTTCATGTAACATTGAATAAATACATTAGATGAGTTACTTTGGTTaatgggccagtttcccagacacagattaagtatAGTCCTGGACCTTAAAGAACTTTCTATTGAAACTTCCATTGAGTCCAGCACTAGACtcaatctgtgtccaggaaacaggCCCCATATGTATTACTGACATGCTTGTCCTTGTTCAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACGCACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTGGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGCAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTTACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCGCTCTGATACTGAGATTACTGTCTTGGAACGTAGATGTCCACTGTGAGCTgatgctctatctgacagtgaaAGGGGAAACATTAATTTCTCGCCTGTACCTGTTCCCATGGAACCCTGGCCAAATACAGGCGGTGGAACTACAGGAGAAGTCTCACGGGTCTTCAAGGATTCTCATCTCCAGACCAGAGCAGTCCTTCAAACTATATAGTTTCTTCAGACTGAacattccctgttctacctcCATCAATCCACAGaAGATTCATCTCATACAAAGAGACACCACACCAAGCTTTTTCAAGGCGATCGTGAAAATAACAGGGATTGACATTGAGATGGAGTTATTCGGTGATGATGAGAGGACAGCATGGAAAGAGAAAGTATCACGATATGAATACATCACTGACACCTGTTCAACAAGTGCTGTGTCGGGGGCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTGCTGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTCAAACAAGTATCAAGACCTGTCCTGAATGAACTGCTGGACAGACTCCTGCAACACACAGTCATCCACCAGGAGGAAATGGAGTCAGTGAAGGTGATCGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCATGTTCCAGGATGATCAACCTTCTTGGGGAGCTGGACCCCAATCTTTGGTCACAGCTTCAGAtcagtgttggggtaccaaccgaatggtagaatggatagtaacagtgttggggtaccaaccgaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagt
>XM_036934110.1
ggagagagttgtatcaagcctggacctgagaaaaccagagaccatggtggagagagttggatcaaacctggacctgaggacaccagagaccacgGTGGAGAGTGTTgtatcaagcctggacctgagaaATTGATTCCTCAGAGCTGTAAGACTTGTGACCATGTTGAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACGCACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTGGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGCAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTTACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCGCTCTGATACTGAGATTACTGTCTTGGAACGTAGATGTCCACTGTGAGCTgatgctctatctgacagtgaaAGGGGAAACATTAATTTCTCGCCTGTACCTGTTCCCATGGAACCCTGGCCAAATACAGGCGGTGGAACTACAGGAGAAGTCTCACGGGTCTTCAAGGATTCTCATCTCCAGACCAGAGCAGTCCTTCAAACTATATAGTTTCTTCAGACTGAacattccctgttctacctcCATCAATCCACAGaAGATTCATCTCATACAAAGAGACACCACACCAAGCTTTTTCAAGGCGATCGTGAAAATAACAGGGATTGACATTGAGATGGAGTTATTCGGTGATGATGAGAGGACAGCATGGAAAGAGAAAGTATCACGATATGAATACATCACTGACACCTGTTCAACAAGTGCTGTGTCGGGGGCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTGCTGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTCAAACAAGTATCAAGACCTGTCCTGAATGAACTGCTGGACAGACTCCTGCAACACACAGTCATCCACCAGGAGGAAATGGAGTCAGTGAAGGTGATCGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCATGTTCCAGGATGATCAACCTTCTTGGGGAGCTGGACCCCAATCTTTGGTCACAGCTTCAGAtcagtgttggggtaccaaccgaatggtagaatggatagtaacagtgttggggtaccaaccgaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagt

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 1b allele 3-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934106.1 False 1690 mRNA 0.45 7 79175205 79180470
XM_036934109.1 False 1689 mRNA 0.45 7 79175205 79180472
XM_036934107.1 False 1793 mRNA 0.46 8 79175205 79180988
XM_036934110.1 True 1414 mRNA 0.48 9 79175205 79183563

Neighbor

gene id symbol gene type direction distance location
LOC118937062 NA coding downstream 16768 79158274 ~ 79158437 (-)
LOC118937050 NA coding downstream 18532 79155529 ~ 79156778 (-)
LOC118937039 NA coding downstream 20332 79154710 ~ 79154873 (-)
LOC118937028 NA coding downstream 22131 79152911 ~ 79153074 (-)
LOC118937017 NA coding downstream 23930 79151112 ~ 79151275 (-)
LOC118936937 NA coding upstream 3672 79186013 ~ 79187776 (-)
LOC110511088 LOC106592313 coding upstream 29232 79212795 ~ 79222203 (-)
LOC110511089 LOC106591771 coding upstream 38725 79222288 ~ 79237169 (-)
LOC118936793 LOC106591370 coding upstream 107628 79291191 ~ 79330506 (-)
LOC110531688 lrpap1 coding upstream 603067 79786630 ~ 79802558 (-)
G927659 NA non-coding downstream 2174 79172815 ~ 79173031 (-)
G927658 NA non-coding downstream 2405 79172547 ~ 79172800 (-)
G927652 NA non-coding downstream 4338 79170363 ~ 79170867 (-)
LOC118936994 NA non-coding downstream 29371 79144484 ~ 79145834 (-)
G927647 NA non-coding upstream 8384 79191947 ~ 79194251 (-)
G927676 NA non-coding upstream 92622 79276185 ~ 79281152 (-)
G927693 NA non-coding upstream 138020 79321583 ~ 79321962 (-)
G927879 NA non-coding upstream 151948 79335511 ~ 79335721 (-)
LOC110497238 LOC106610518 other downstream 665274 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 701146 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 730064 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 733223 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 741109 78382269 ~ 78434096 (-)
G927654 LOC106591987 other upstream 34952 79218515 ~ 79222867 (-)
G927673 NA other upstream 91130 79274693 ~ 79281790 (-)
G927893 NA other upstream 188553 79372116 ~ 79372872 (-)
G927948 LOC106602109 other upstream 372407 79554714 ~ 79559828 (-)

Expression


Co-expression Network