LOC118936937


Basic Information

Item Value
gene id LOC118936937
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79186013 ~ 79187776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034363.1
tttctatccaactGGTAACAGGCTAGGTTTCTATCCATCTGTTAACAGgctaggtttctatccaactGGTAACAGGCTAGGTTTCTATCCATCTGGTAACAGgctaggtttctatccaactGGTAACAGGCTAGgtttctatccaactGGTATGGTAACAGGCTAGgtttctatccaactggtaacaagctaggt
>TU1055759
CTGGTATGGTAACAGgctaggtttctatccaactggtaacaagctaggtttctatccaactGGTATGGTAACAGgctaggtttctatccaactGGTATGGTAACAGgctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaggctaggtttctatccaactggtaacaggctaggtttctatccaactGGTAACAGGCTAGgtttctatccaactggtaacaggctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactGGTAACAAGCTAGGTTTCTATCCAATCCCACATATTTCCATGATGACAAAACCCTGTGAGTTTGTCGTCACACATTGAGATTCGTGGTTGTAATTAAATTTCACAATCTtgtatcatgttgtgttgttgtttttcacccctttttcgtggtatccaattggtagttacagtcttgtctcatcgctgcaactcccgtacagactctgGAGAGGCGAAGGCCGAGagtcgtgcgtcctccgaaatcacaacccagccaagccgcactgctttttgacacc
>TU1055760
TTTCTATCCATCTGTTAACAGgctaggtttctatccaactGGTAACAGGCTAGGTTTCTATCCATCTGGTAACAGgctaggtttctatccaactggtaacaagctaggtttctatccaactGGTATGGTAACAGgctaggtttctatccaactggtaacaggctaggtttctatccaactggtaacaggctaggtttctatccaactGGTAACAGGCTAGgtttctatccaactggtaacaggctaggtttctatccaactggtaacaggctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactggtaacaagctaggtttctatccaactGGTAACAAGCTAGGTTTCTATCCAATCCCACATATTTCCATGATGACAAAACCCTGTGAGTTTGTCGTCACACATTGAGATTCGTGGTTGTAATTAAATTTCACAATCTtgtatcatgttgtgttgttgtttttcacccctttttcgtggtatccaattggtagttacagtcttgtctcatcgctgcaactcccgtacagactctgGAGAGGCGAAGGCCGAGagtcgtgcgtcctccgaaatcacaacccagccaagccgcactgctttttgacacc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593923

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034363.1 False 195 mRNA 0.43 3 79187235 79187776
TU1055759 False 673 lncRNA 0.44 3 79186013 79187283
TU1055760 True 701 lncRNA 0.44 5 79186013 79187749

Neighbor

gene id symbol gene type direction distance location
LOC110513570 NA coding downstream 3672 79175205 ~ 79183563 (-)
LOC118937062 NA coding downstream 28798 79158274 ~ 79158437 (-)
LOC118937050 NA coding downstream 30562 79155529 ~ 79156778 (-)
LOC118937039 NA coding downstream 32362 79154710 ~ 79154873 (-)
LOC118937028 NA coding downstream 34161 79152911 ~ 79153074 (-)
LOC110511088 LOC106592313 coding upstream 25019 79212795 ~ 79222203 (-)
LOC110511089 LOC106591771 coding upstream 34512 79222288 ~ 79237169 (-)
LOC118936793 LOC106591370 coding upstream 103415 79291191 ~ 79330506 (-)
LOC110531688 lrpap1 coding upstream 598854 79786630 ~ 79802558 (-)
LOC118936938 LOC106610425 coding upstream 902786 80090562 ~ 80094309 (-)
G927659 NA non-coding downstream 14204 79172815 ~ 79173031 (-)
G927658 NA non-coding downstream 14435 79172547 ~ 79172800 (-)
G927652 NA non-coding downstream 16368 79170363 ~ 79170867 (-)
LOC118936994 NA non-coding downstream 41401 79144484 ~ 79145834 (-)
G927647 NA non-coding upstream 4171 79191947 ~ 79194251 (-)
G927676 NA non-coding upstream 88409 79276185 ~ 79281152 (-)
G927693 NA non-coding upstream 133807 79321583 ~ 79321962 (-)
G927879 NA non-coding upstream 147735 79335511 ~ 79335721 (-)
G927891 NA non-coding upstream 182802 79370578 ~ 79377153 (-)
LOC110497238 LOC106610518 other downstream 677304 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 713176 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 742094 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 745253 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 753139 78382269 ~ 78434096 (-)
G927654 LOC106591987 other upstream 30739 79218515 ~ 79222867 (-)
G927673 NA other upstream 86917 79274693 ~ 79281790 (-)
G927893 NA other upstream 184340 79372116 ~ 79372872 (-)
G927948 LOC106602109 other upstream 368194 79554714 ~ 79559828 (-)

Expression


Co-expression Network