LOC110511089 (LOC106591771)


Basic Information

Item Value
gene id LOC110511089
gene name LOC106591771
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79222288 ~ 79237169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934112.1
cctctctccctcatcccctctccctccacctcgtGTCTCAACACAGGAAGACATGGACCTTACGGGTAGAAGACAAAACATCTGAGCTGAGTGAGCTGTGACTTAcatctaaaatgagtctctctggggggagagaggaggggacaacTGCCTCTGAAATGAgcctctctggggagagagaggaggggaccacTGCCTCTAAAATGACTCAAGACACAAGTTCTAAGAGTGTCCTGAAGCCCAGAGCAGTGTCACCTACAACCAGCCTGCTATCAATGAAGTGTGATCGGCCACCTGCTTTCAGCCAGGAACCATTACCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTGAGGATGCATTAAAGATCACACACAACCTTCTGGACAGAAGAAGTCAAACTCTGCTGACAGTCCAACAAGACATCAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAGGACATCTACACAGACctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAAGAAACTAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTGCTGACCAAAGGAATCGCTGGTGttggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCCCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACCAAAACTGTTTTCATttttgatggtctggatgagtgtCGACTTCCTCTAGACTTAACAAATGATGAGAAGTGCTGTGATGTCACGATGCCAACCTCAGTGGACGTGCTACTGACAAACCTCATCAAGGGGATtctgcttccctctgctctcctctggataacCACACGACCTGCAGCAGCCAATCAGATCCCTCCTGAGTGTGTTGACCAAgtgacagaggtacgagggttcaatgaTCCACAGAAGGAGGTGTACTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAATACATGAAGACATCAAGAAGCCTACACATCATGTGCCACATACCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATgctgaaagagacagagaaggatGAAGTCCCCAATACTCTGACCCAGATGTACTCACACTTCATGCTCATCCAAATCATTGTGAAGAACAGGAAGTACAACAAAGCCACAGAGACAAGCCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAGCTGGCTTTCCAACAGCTGCAGAAGGGCAACCTGATCTTCTACGAGGAGGACCTGAGAGAGTGTGGTCTTGACGTCACAGAGGCATCAGAGTACTCAGCATTGTGTACAGAGATCTTTAAAGAAGAATCTGGGCTGTACCAAGAGAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTGGAcaagaaggaaaatgtttttcCCACCACTAGTGATGATGAAGAGAAGAAGTCAATCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaatCTGTTACGAGGCCTTCTGACACAGACAGGAAGTACCACACGGAGCAATAAGAAAACAGTTGAGAGAACAGTCAGGTACCTTTCAGACAAGATCGACGAAGAATCCTCACCAGAAAGGATCATCAACttgttccactgtctgaatgaacttGGTTCCAACTCTCTAGTTGAAGACATGCAGACCTCCCTGCGATCAGGAACTCTTTCAGAAACAAGACTAAAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagTTTGACCTGAAGACATACAGCACATCAGAGGAAGGTTATCAGAGGTTGCTGCCGGTAGTGAAAACCTGCAAGAGAGCACTACTAGCTGGCTGTAAACTCACATATGAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAGCTGCAGCTGAGAGACAATGACCTGCAGAACTCAGGAGTTACattgctgtctgctggactggaggatccagaCTGTAAACTAGACACACTGGGtctaggtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAACTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagaCTGTAAAATACACACACTGGGgctgtctggctgtctggtcACAGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagactctGCAGGGGAACTGCTTTCAGCTGCTCTGGTGGATCCCACATATAAACTGATGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGCTGAAATCAGGGCTGAGGAAATATGCCTGTCATCTCACCCTGGACCCAAATACAGCACACCCACACCTGATACTGTCTGAGGGGAACAGGAAGGTGACACGGGTGGTGGAGGACCAGCATTATGAAGACCATCCAGACAGATTTGATTGTCTTCATCAGGTTCTCTGCAGAGAAGGCTTATCTGGGTGTCGTTATTACTGGGAGGTGGAGATGGATGGTACCGGGGCAGTCATTGGTGTGGTGTACAGAGGAAtgaagaggaagggaaggggggTTGACAGTGACATTGGAGGCAATAAGAAGTCCTGGTGTTTATTCTGCTCTCATAGTGGTTATTGCTTTTACCATCCTGGAGTCTGTTGCAGATCCATCCCTGGTCCTGTTTCTAACAGAGTtggagtgtatctggactggtCAGCTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTACACCGACACACCACCTTTACACAGAACACACCACATTCACTGAACCCCTCTATCCTGGGTTTGGTGTttcctcctcctcagtgacctCAGTGACCCTGCGTCAGATAGATGACCAACACATTCAGAGAAATAGAACTacagaccatggtggagagagttgtatcaagcctggacctgag
>TU1055754
ATGAAGTGTGATCGGCCACCTGCTTTCAGCCAGGAACCATTACCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTGAGGATGCATTAAAGATCACACACAACCTTCTGGACAGAAGAAGTCAAACTCTGCTGACAGTCCAACAAGACATCAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAGGACATCTACACAGACctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATG

Function

NR:

description
protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934112.1 False 3554 mRNA 0.48 11 79222288 79237169
TU1055754 True 309 TUCP 0.44 2 79231171 79231580

Neighbor

gene id symbol gene type direction distance location
LOC110511088 LOC106592313 coding downstream 85 79212795 ~ 79222203 (-)
LOC118936937 NA coding downstream 34512 79186013 ~ 79187776 (-)
LOC110513570 NA coding downstream 38725 79175205 ~ 79183563 (-)
LOC118937062 NA coding downstream 63851 79158274 ~ 79158437 (-)
LOC118937050 NA coding downstream 65615 79155529 ~ 79156778 (-)
LOC118936793 LOC106591370 coding upstream 54022 79291191 ~ 79330506 (-)
LOC110531688 lrpap1 coding upstream 549461 79786630 ~ 79802558 (-)
LOC118936938 LOC106610425 coding upstream 853393 80090562 ~ 80094309 (-)
LOC118936799 LOC106610425 coding upstream 905525 80142694 ~ 80145965 (-)
LOC118936800 LOC106610425 coding upstream 923444 80160613 ~ 80163884 (-)
G927647 NA non-coding downstream 28037 79191947 ~ 79194251 (-)
G927659 NA non-coding downstream 49257 79172815 ~ 79173031 (-)
G927658 NA non-coding downstream 49488 79172547 ~ 79172800 (-)
G927652 NA non-coding downstream 51421 79170363 ~ 79170867 (-)
G927676 NA non-coding upstream 39016 79276185 ~ 79281152 (-)
G927693 NA non-coding upstream 84414 79321583 ~ 79321962 (-)
G927879 NA non-coding upstream 98342 79335511 ~ 79335721 (-)
G927891 NA non-coding upstream 133409 79370578 ~ 79377153 (-)
G927893 NA non-coding upstream 134947 79372116 ~ 79372872 (-)
LOC110497238 LOC106610518 other downstream 712357 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 748229 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 777147 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 780306 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 788192 78382269 ~ 78434096 (-)
G927673 NA other upstream 37524 79274693 ~ 79281790 (-)
G927948 LOC106602109 other upstream 318801 79554714 ~ 79559828 (-)
G927980 LOC106591517 other upstream 348909 79586078 ~ 79587865 (-)
LOC110517091 pi4k2b other upstream 1367600 80580548 ~ 80610829 (-)
G927654 LOC106591987 other downstream 8304 79218515 ~ 79222867 (-)

Expression


Co-expression Network