LOC118936795


Basic Information

Item Value
gene id LOC118936795
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79435521 ~ 79439621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034252.1
tactgtagaccaggggcctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactatagaccaggcctcatgtcaaaagtagtgccagGAGAGAGACTTGAATGAGGATATGATCACGTCTCCCTACACCACGGAGTCTCTTCCGTAAGAATGACTTGAGACGAGCGTTTTCGggccattttgttttgtttgtttattttctttGTCATTCAGGCGACCATATTATTTACCAACCGTCCAACCAATGTAACCCCCCctttcactttttttttaatgCTGTGAAAATGTTGAGATGGATCTTTTTGGCTGcttgctgtacatactgtactgtattcatGTCTTTTTATAGAGACACCCAGCCTCCCAGAATGACCTTTCATTCTGTTTAACCATTGGAGGGGTGAATCTAAGAATCTTATGACAGTGGTTACCTTTGTCCTCTGTTCCGGAATCCCATTATGACGTCATtgatttgaatcaattagaatgtTCAAACagaatgttctgttgacattccTTCAAAGGGGTTCAAGGAATTCCATTCtacatttactttttttttacacaaatgaCTGCAGTTAATCATTGaaaatcatcaatcaatcaaatgcatttagAATTAGAATACACCACACAGTTCTACTTCTGAAGCCACTAGAACTCCTCTGTTAGAAAACAACGTTACGTTtctcacatacacatatatacacttgTCGTGGCTCGGCTCCAACACGCCTGGTATCTTGACATGGGGAAAGAGAACTGTGAGTGTTCAGAGATCTGGCTGTTCCATGACATTCTATTCTAGAATTAGGAACGTTATACAGTGCAGGACATAGCTAGCTCTGGCTGTTGGCTTCTCGTTGTCTTTTTCTACATGCTATATTTCTTTGCTTCCAGACGCACCACGAAGCTCACCTCCACCTGTCAGTCAGTGTAGAAACACTCTTTGCCTCAAAAACCATGTAAATGATGTACTTCAAAACTTGTAAGCTCTTTTTATATCTCATTAGGCGCAGGCAcgcacccagacacacacacacacacacttggactGGGGGTAAAGGCTTGGCATCCATCCCTGTACAGCAGTAAGATATTTCATTTTGCGGCACTAAAGTGTGGAAACTGTCtgcttctcaaatggcaccctgttccctactgtatgtagtgtactacaaaagaagtgcactacatagggcataGCGGTTCATTTGGGACACGTGCAATAACTATAGGAAGTGTCTTTGAGCATAATGCAAATGACACCAAATCAAACTGGAAATGGTTttgatttaaaaatgtttaaaaaaaaacgttttttcaaCTGACATAACTGGCATAAACCTTGATCTACAGTATGTGGAGGGCCAAGAGTtgttcctgaccatgtgacctggccCGGGAAAAAACCTCTGAGCCCAACTTATAAAGCCTCTCTATGACCCACGATTCAATCCGATCGCTCTTTGTCCACAATGCAcgttttttttaaagtcaatgtTCACAGTAAAATGTCGTCTCGGTCAGAaatgaccttttttttttttaaatggcgcaTTGTCCAAATCCCCCGGAGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTCCAAATCCCCCGGAGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTCCAAATCCTGCGGAGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTCCAAATCCTGCGGCGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTCCAAATCCTGCGGCGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTTCCTGGTCATGTGATCAGGATGGAGGAACTCCAGGCCTCACCCACACAGTATGTGCCAACCAGTCATAATTAGTCAGTGTCCTTTCTTTTCGACGTCTGAATGGACGGTCCCACGTTAGGCTGACAAGGAACCTAAATACAGctcattaaaaaaataacatttttaatatttttttttttttacatgttttgaATGTCTGCACAAAGtgtatttttaataaatgaaacaaaaataaaaatccaATTATTACTCAAGCATGTTATAGGTTGTTGCAGGTTCCTTGTCTGTAATTGAAATTTACCTTTCAGTGCCAACATATGACATGTATTTACAGGGGACAACGACACATTTGTTACCACAAGGTGACCAgacaaattatatatatattttttttgtggggggctacgtcccaaattgacaacttactccctatatagtggccTACTTGTGAACAGGGCCCATAAAGGCTCTGTTCAAAAtgccctggtcaagagtagtgcactatgtagggaatgaaaacgggtgccatttgggacagagctcTTTTTTTAATGAtctttataattattatttttgtacAGTCGTGTTGCTCAACCACTGCAGTTCATGTAATTGTTGTACAAGTTGTATCACTGGGTGTTACTGTGTCATATCTTCTGACATTTGTAATTAGTCCTGAGAATACACTGCCGTTTtggataaaaaataataataataacacaaatCCTCC
>TU1055819
GATCGTATGCAAAATGTAGGCAAGGTTTTAAATAATTATGTTTTAATcaaatatatctgtttgggcttcttgcggtcaatttgcaagTCTCCAAATAATTTGTAATCACGTTCCGTCTGAATCTAGTTAATGATCCCTGACCTTCTTACTGGGTCCACGTGAAGATATGAGAGGATTGGACAGCAGAACAAGATTTGTCAATTCTGTCTACATGTCTCATAGTCAAAATAACTTCCTTAAAAACTTTAAACTTCCCTAAAAACTACGGAAAATGTAGTCACCCACTTCCAGAAAAGCACAGATAAGCAGTTGACATGGAATAGTCCATTGTTCTGGCAGAGGGGTGGGAAGAGAGATGCCTTGATTTAACAGTATACCTTGTGTCCATGCCTTCAGCTAtggtggtgatgaggatgatTTACAAACCGAATAGAAAGGTTATGAAACGTCACAGAATCGTTTTGTAACTCAGACTGGCTTCATCTTGAAGACAAAAGTGCTTTCATATAATCAACAAACAAACATGTCAAATAGGTTAAATTAGACCAATTCTTGGCACCGAGATGCACCTATTTGACATGGCAAAATGACCTACAGTTTAATCATAATGATATCTTTGCCTCCACCCAAGGGTGTGTGACCCAAAATGACACCCTactacctatatagtgcactacttttgatgagagtcctatgggccctggtcaaaagtagtgcactgtaaagggaatagggggccatttgggacactagGCATCTTTCACATGCACCGtgttcccctgtctatcccctaaCATAACATTGTTCCATAGAAACGGATCTAAGGTCCCCTTTGTTGATTGGTAGTCAGGATTGGGAAAAGGGGGGGAAACAGCCTCATCACGGTTGCTATGACAACTAGACGTTccatttaaataaaaataaaaaatgaacacaGCCTTCGTTCCAattgggaccctattccctatatagtgcactactttagaccagagccctattccgtatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccgtatatagtgcactactttagaccagagccctattccgtatatagtgcactactttagaccagagccctattccgtatttagtgaactactagtgaccagggccctattccctatatagtgaactactagtgaccagagccctattccctatatagtgaactactagtgaccagagccctattccctatatagtgcactactttagaccagggccctatatagtgcactactgtagaccaggggcctattccctatatagtgcactactttagaccagggccctatatagtgcactactgtagaccaggggcctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactatagaccaggcctcatgtcaaaagtagtgccagGAGAGAGACTTGAATGAGGATATGATCACGTCTCCCTACACCACGGAGTCTCTTCCGTAAGAATGACTTGAGACGAGCGTTTTCGggccattttgttttgtttgtttattttctttGTCATTCAGGCGACCATATTATTTACCAACCGTCCAACCAATGTAACCCCCCc
>TU1055808
acacacacacttggactGGGGGTAAAGGCTTGGCATCCATCCCTGTACAGCAGTAAGATATTTCATTTTGCGGCACTAAAGTGTGGAAACTGTCtgcttctcaaatggcaccctgttccctactgtatgtagtgtactacaaaagaagtgcactacatagggcataGCGGTTCATTTGGGACACGTGCAATAACTATAGGAAGTGTCTTTGAGCATAATGCAAATGACACCAAATCAAACTGGAAATGGTTttgatttaaaaatgtttaaaaaaaaacgttttttcaaCTGACATAACTGGCATAAACCTTGATCTACAGTATGTGGAGGGCCAAGAGTtgttcctgaccatgtgacctggccCGGGAAAAAACCTCTGAGCCCAACTTATAAAGCCTCTCTATGACCCACGATTCAATCCGATCGCTCTTTGTCCACAATGCAcgttttttttaaagtcaatgtTCACAGTAAAATGTCGTCTCGGTCAGAaatgaccttttttttttttaaatggcgcaTTGTCCAAATCCCCCGGAGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTCCAAATCCCCCGGAGTCTATAGGACGGGATTCAGTCCCATCTTCTAACTATAGGGCCCCTTGTTGTTCCTGGTCATGTGATCAGGATGGAGGAACTCCAGGCCTCACCCACACAGTATGTGCCAACCAGTCATAATTAGTCAGTGTCCTTTCTTTTCGACGTCTGAATGGACGGTCCCACGTTAGGCTGACAAGGAACCTAAATACAGctcattaaaaaaataacatttttaatatttttttttttttacatgttttgaATGTCTGCACAAAGtgtattt
>TU1055825
gagtagtgcactatgtagggaatgaaaacgggtgccatttgggacagagctcTTTTTTTAATGAtctttataattattatttttgtacAGTCGTGTTGCTCAACCACTGCAGTTCATGTAATTGTTGTACAAGTTGTATCACTGGGTGTTACTGTGTCATATCTTCTGACATTTGTAATTAGTCCTGAGAATACACTGCCGTTTtggataaaaaataataataataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034252.1 False 2648 mRNA 0.41 2 79436891 79439621
TU1055819 False 1650 lncRNA 0.42 1 79435521 79437170
TU1055808 False 871 lncRNA 0.42 2 79438036 79439104
TU1055825 True 228 lncRNA 0.35 1 79439383 79439610

Neighbor

gene id symbol gene type direction distance location
LOC110516120 grk4 coding upstream 5073 79354449 ~ 79431818 (+)
LOC118936794 NA coding upstream 28665 79405833 ~ 79408226 (+)
LOC118936989 NA coding upstream 152238 79284490 ~ 79284653 (+)
LOC118937003 NA coding upstream 154109 79282619 ~ 79282782 (+)
LOC118937004 LOC106592095 coding upstream 156032 79218822 ~ 79318667 (+)
LOC110511504 NA coding downstream 3766 79443387 ~ 79574541 (+)
LOC118937092 NA coding downstream 74854 79514475 ~ 79514604 (+)
LOC118966659 NA coding downstream 140485 79580106 ~ 79581616 (+)
LOC110516173 LOC106596573 coding downstream 144453 79584074 ~ 79703116 (+)
LOC110514189 LOC106593948 coding downstream 157454 79597075 ~ 79601686 (+)
G927711 NA non-coding upstream 1982 79433116 ~ 79434909 (+)
G927737 NA non-coding upstream 40647 79395827 ~ 79396244 (+)
G927729 NA non-coding upstream 60185 79375517 ~ 79376706 (+)
G927718 NA non-coding upstream 98000 79338138 ~ 79338891 (+)
G927745 NA non-coding downstream 1634 79441255 ~ 79441499 (+)
G927750 NA non-coding downstream 11603 79451224 ~ 79453212 (+)
G927752 NA non-coding downstream 36265 79475886 ~ 79476305 (+)
G927754 NA non-coding downstream 48997 79488618 ~ 79489128 (+)
G927755 NA non-coding downstream 60751 79500372 ~ 79501998 (+)
G927606 NA other upstream 152747 79281386 ~ 79284144 (+)
G927584 NA other upstream 233910 79200281 ~ 79202981 (+)
LOC110515636 LOC105020871 other upstream 371344 79023569 ~ 79065796 (+)
G927061 LOC106602167 other upstream 649328 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 906290 78519650 ~ 78533161 (+)
LOC110532970 LOC105020822 other downstream 287424 79727045 ~ 79782057 (+)
G928206 NA other downstream 587381 80027002 ~ 80028219 (+)
G928335 NA other downstream 872323 80311944 ~ 80316569 (+)
LOC110515606 LOC106597156 other downstream 1382043 80723535 ~ 80922638 (+)

Expression


Co-expression Network