LOC110514189 (LOC106593948)


Basic Information

Item Value
gene id LOC110514189
gene name LOC106593948
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79597075 ~ 79601686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934132.1
CATGCCCTGGCCTTGACTCCAAACTCAAACCATACCTTATTGATTCAATATATGTAGGGATGGACACCTGTTCTACTCTGcttccttctcgctctcttttttaCAGTCTTGATTATGTGGGTTTTATCTGCGCCAAACTTGGTGCAAAACCACGCCCACGAGTAGCCGAGCAAAAGCCGCGCTGATTGGACAGCTTGTTCTGACGTTCCTCTTCAGGAAGTAAACGCGACATTTTCGGGTTTGGTATATAAGCTGGTATTAAAATAAGAAAAGTAACTCCTAGCGACATCAACAGACTGCAAAGCGTTATTGATTTACCTCGCAGCCAGTGGACTGACGATTGTCGACACTGCTGGACATATTTTCAAGCtattagctagcaagtttacatttgcaagtagctagctagctagtcgaGTGTGCTGCTGTGTTGAGACGGACAACCATCATCAACGGTATTGCTAACTAACGTTAACCTCAACTAAAGAGCTTTCCCCGTTGTCACGTGCGCTACCGTCGCCGCTCCAAAATGCCTCGCGAGTGCGCTGTTAAAACGTGCGACAACAAGCAAAAGACTTGGTCGGCTCTAATGTTTCACCGACTTCCACTGAGTCATCCGGACCGATTGAAACTGTGGCTGATTGCTCTGAACAAAGATGCTAATACCGCGACCGATGACCTCAGAAAGTTACTCGTTTGCTCGGAACATTTTCTACCGGGGGACTATTACGAGAAGCTGGGACAGGACAGACACAGCAGGATGAGAATCATGAAAAGTTTCCTGAAGGATACAGCGGTGCCGTCGGTGGCCGTTCACGCGCCAGGACAACGTGGAATAATATCGgTTGAGACGGGAGACGTACCTCCAGGGACTGACTCCCTGTCTGCTGGAGGGGCATCTGGTCCCACCCCACAACGTGGAGGGTCAGGTGTTGCTACGACCGGGTTCCTCTCCCACCGGGGTCTGCAGCTGACAGAGCCTGCTTTAACCTCTGGGGCGTACGTGGCTCTGGCTCCCACCTGTTCACTTAGTAAGGACCTCCCCTCTACGACGACAACGGGAGACGCATGCAGAAGGAAAAAAACAAAGACCAACGTTCCTGTGACGCGCAGGAAGAAAGGTCAAATGGACGCAGCCGTTAAGAAGACTTCAGTGAAGGACTGTACCAGTATGAGCTCTGCTGCTGGTTCCACCTCCAACCCCTCCACCTCCAGCCTCTCCACCTCCAacctctccacctccagccccTCCACCTCCAGCCCCTCCACCTCCAGCCCCTCCACCTCCAGCCACTCATCCAACTTTGACAGTAGGGTGTCGTCAGGCGAACCGGACGGAGAACCGGACGGAGGAGGAGTTTGGAGCGAAAGGAAATGGATGGTGAACGAGTCGAAGCTCAAGGAGCTTTTCCAGACGTGTCACCAGTGCGGCGCTGCGTTGCGTAATCGGACCATAACCGCGTTGGGCTACAGCCAAATCAAAGTCACCTGGACGTGTCCCGATGAGCACCGAGGAGAGTGGCAGTCGTGTCCCGATGCGTTCGGTATCGGTCACTACCTGCAGACGGTGGGTTACAGAGTGTTGCTGGACTCCATGAATAGTCCGTTTGTAAGTCACGACTAAGTAtctactacagtgtgtgtgttatctagCGAATACCTGGGTCGTAGTAGCCTCCTGTTACCAGACTGatgacctactgccagactgatgacCTACTGCCAGACGGatgacctactgccagactgatgacCAACTGCCAGACTGATGACCAACTGCCAGACTGATGACCTGCTGCCAGACTGATGACCTGCTGCCAGACTGATGACCTGCTGCCAGACTGACGGCCTGCTGCCAGACTGACGGCCTGCTGCCAGACTGACGGCCTGCTGCCAGACTGACGGCCTGCTGCCAGACTGACGGACTGCTGCCAGACTGACGGCCTGCTGCCAGACTGCGGAGCAAAACACAATAGAAACTTACAGGACTTCACTATGGCTGTACTGGGTTGAGGGGTACCTCTCTATGGATGTACTGGgttcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttga
>TU1055895
AAAGACTTGGTCGGCTCTAATGTTTCACCGACTTCCACTGAGTCATCCGGACCGATTGAAACTGTGGCTGATTGCTCTGAACAAAGATGCTAATACCGCGACCGATGACCTCAGAAAGTTACTCGTTTGCTCGGAACATTTTCTACCGGGGGACTATTACGAGAAGCTGGGACAGGACAGACACAGCAGGATGAGAATCATGAAAAGTTTCCTGAAGGATACAGCGGTGCCGTCGGTGGCCGTTCACGCGCCAGGACAACGTGGAATAATATCGgTTGAGACGGGAGACGTACCTCCAGGGACTGACTCCCTGTCTGCTGGAGGGGCATCTGGTCCCACCCCACAACGTGGAGGGTCAGGTGTTGCTACGACCGGGTTCCTCTCCCACCGGGGTCTGCAGCTGACAGAGCCTGCTTTAACCTCTGGGGCGTACGTGGCTCTGGCTCCCACCTGTTCACTTAGTAAGGACCTCCCCTCTACGACGACAACGGGAGACGCATGCAGAAGGAAAAAAACAAAGACCAACGTTCCTGTGACGCGCAGGAAGAAAGGTCAAATGGACGCAGCCGTTAAGAAGACTTCAGTGAAGGACTGTACCAGTATGAGCTCTGCTGCTGGTTCCACCTCC

Function

NR:

description
putative protein TPRXL

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934132.1 False 2112 mRNA 0.52 4 79597075 79601686
TU1055895 True 628 TUCP 0.54 4 79597645 79600772

Neighbor

gene id symbol gene type direction distance location
LOC118966659 NA coding upstream 15459 79580106 ~ 79581616 (+)
LOC110511504 NA coding upstream 22534 79443387 ~ 79574541 (+)
LOC118937092 NA coding upstream 82471 79514475 ~ 79514604 (+)
LOC118936795 NA coding upstream 157454 79435521 ~ 79439621 (+)
LOC118936794 NA coding upstream 188849 79405833 ~ 79408226 (+)
LOC118936796 NA coding downstream 96392 79698078 ~ 79700682 (+)
LOC110532970 LOC105020822 coding downstream 125375 79727045 ~ 79782057 (+)
LOC118936797 LOC106610424 coding downstream 281229 79882915 ~ 79895771 (+)
LOC118936798 LOC106610412 coding downstream 415271 80016957 ~ 80021704 (+)
LOC110516353 LOC106610561 coding downstream 752251 80353937 ~ 80358078 (+)
G927713 NA non-coding upstream 19325 79555574 ~ 79577750 (+)
G927700 NA non-coding upstream 21125 79574739 ~ 79575950 (+)
G927764 NA non-coding upstream 34403 79562320 ~ 79562672 (+)
G927761 NA non-coding upstream 50384 79545397 ~ 79546691 (+)
G927755 NA non-coding upstream 95077 79500372 ~ 79501998 (+)
G927782 NA non-coding downstream 40621 79642307 ~ 79648095 (+)
G927783 NA non-coding downstream 49482 79651168 ~ 79651460 (+)
G927785 NA non-coding downstream 55258 79656944 ~ 79657412 (+)
G927791 NA non-coding downstream 70424 79672110 ~ 79674388 (+)
LOC110516173 LOC106596573 non-coding downstream 100446 79584074 ~ 79703116 (+)
G927606 NA other upstream 312931 79281386 ~ 79284144 (+)
G927584 NA other upstream 394094 79200281 ~ 79202981 (+)
LOC110515636 LOC105020871 other upstream 531528 79023569 ~ 79065796 (+)
G927061 LOC106602167 other upstream 809512 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 1066474 78519650 ~ 78533161 (+)
G928206 NA other downstream 425316 80027002 ~ 80028219 (+)
G928335 NA other downstream 710258 80311944 ~ 80316569 (+)
LOC110515606 LOC106597156 other downstream 1219978 80723535 ~ 80922638 (+)
G928731 NA other downstream 1517879 81119565 ~ 81120877 (+)
LOC110516120 grk4 coding upstream 165827 79354449 ~ 79431818 (+)

Expression


Co-expression Network