LOC110531688 (lrpap1)


Basic Information

Item Value
gene id LOC110531688
gene name lrpap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79786630 ~ 79802558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934139.1
GGTGTTGTGTCTCGCAGTCGGGGCGATTGCAGGAAAGTATTCTCGAGAAATGAACGATCAGAAACCGTCCGTGGACGGTAAGAGCACGGTGGAATTTAGGATAGCTAAACTCAACCAGGTGTGGGAGAAAGCGACCAGGATGCAGTTGCCCCCAGTGCtccagtctaacaccagtctctctctttcgctccatccatccctctctccttccttcctctagaTGCAGTTGCCCCCAGTGCGTCAGGCagagctccacagtgatctgaaGATCCAGGAGAAAGATGAATTACAGTGGAAGAAGTCTAAGGCAGAAGGGATGgatgagaatggagagagagaggccaagcTACGACGTGGCTTCaacgTGATCCTGGCTAAGTATGGGATGGATGGGAAGAAGGACACCAGACCTCTAGAGTCTAACAACCTGAAGGACCATGACATCAGAGAAGGAGACATGTTTGATGACCCCAGACTGGACAAACTGTGGAATaagGCTAAGAGTTCTGGTAAGTTCTCAGAGGAGGAGATGCAGAGTCTGAAGAGGGAGTTTCAACACCACAAGGACAAGATCAGCGAGTACAACATCGTCATGGATACCGTCAGCCGCACGGAGGaGATCCATAAGAATGTGATCTCTCCATTAGAAGGGGAAGTTAAACAACATGTCCTGCATCAGAAACACACCGACCTGAAGGACAAGATGAGGGATCTGAACCAGGGCTTTGAACGCCTGAGGAAACTCAGCCACGAAGGCTTCAGCGAGGACAGCGagtTTAAAGAGCCCAGGGTGATAGAGCTGTGGGAGATGGCACAGAGAGCCAACCTGACTGGGGATGAACTGGACTcgctcaaggAGGAACTGAAGCACTTTGAGACCAAGGTAGAGAAGCACAGCCACTACCAGgaACAGTTGGAGTTATCCCACCAGAAGCTGAGACATGTAGAAGCTCTAGGAGACAACGACCACATCCTGAGAAACCAGGAGAGATACAATAACCTGGCAGAGAAGACCAGAGAGATGGGATACAAGatgAAGAAGCACATGCAGGATTTAACCAGCAAGATCTCCCGTAAAGGACTGGACCGTAACGAACTGTAAGGGGTTACTCAGACGAGGCCCTGGAGGGGGGGGGACAGAAGGCCCTGGGGGGGGG
>XM_036934138.1
GGACGCGTCCGCCTCTTCTAAACACATGACTTGAAGTACTCGGAGTTAGATAGACCGTAGCTCTGAAATTGCGTTTCATTTTTAAGATTTATTCCATCCATTTTCCGGTACGGTGCAAAAATGAAGTTCGGTTGTTTATTCGCGGTGTTGTGTCTCGCAGTCGGGGCGATTGCAGGAAAGTATTCTCGAGAAATGAACGATCAGAAACCGTCCGTGGACGGTAAGAGCACGGTGGAATTTAGGATAGCTAAACTCAACCAGGTGTGGGAGAAAGCGACCAGGaTGCAGTTGCCCCCAGTGCGTCAGGCagagctccacagtgatctgaaGATCCAGGAGAAAGATGAATTACAGTGGAAGAAGTCTAAGGCAGAAGGGATGgatgagaatggagagagagaggccaagcTACGACGTGGCTTCaacgTGATCCTGGCTAAGTATGGGATGGATGGGAAGAAGGACACCAGACCTCTAGAGTCTAACAACCTGAAGGACCATGACATCAGAGAAGGAGACATGTTTGATGACCCCAGACTGGACAAACTGTGGAATaagGCTAAGAGTTCTGGTAAGTTCTCAGAGGAGGAGATGCAGAGTCTGAAGAGGGAGTTTCAACACCACAAGGACAAGATCAGCGAGTACAACATCGTCATGGATACCGTCAGCCGCACGGAGGaGATCCATAAGAATGTGATCTCTCCATTAGAAGGGGAAGTTAAACAACATGTCCTGCATCAGAAACACACCGACCTGAAGGACAAGATGAGGGATCTGAACCAGGGCTTTGAACGCCTGAGGAAACTCAGCCACGAAGGCTTCAGCGAGGACAGCGagtTTAAAGAGCCCAGGGTGATAGAGCTGTGGGAGATGGCACAGAGAGCCAACCTGACTGGGGATGAACTGGACTcgctcaaggAGGAACTGAAGCACTTTGAGACCAAGGTAGAGAAGCACAGCCACTACCAGgaACAGTTGGAGTTATCCCACCAGAAGCTGAGACATGTAGAAGCTCTAGGAGACAACGACCACATCCTGAGAAACCAGGAGAGATACAATAACCTGGCAGAGAAGACCAGAGAGATGGGATACAAGatgAAGAAGCACATGCAGGATTTAACCAGCAAGATCTCCCGTAAAGGACTGGACCGTAACGAACTGTAAGGGGTTACTCAGACGAGGCCCTGGAGGGGGGGGGACAGAAGGCCCTGGGGGGGGG

Function

symbol description
lrpap1 Predicted to enable lipase binding activity; lipoprotein particle receptor binding activity; and receptor antagonist activity. Predicted to be involved in negative regulation of receptor internalization and negative regulation of very-low-density lipoprotein particle clearance. Predicted to be located in endoplasmic reticulum. Predicted to be active in several cellular components, including cis-Golgi network; endoplasmic reticulum-Golgi intermediate compartment; and rough endoplasmic reticulum lumen. Is expressed in neural tube; otic placode; and pronephric duct. Human ortholog(s) of this gene implicated in Alzheimer's disease; dementia; myocardial infarction; and myopia. Orthologous to human LRPAP1 (LDL receptor related protein associated protein 1).

NR:

description
alpha-2-macroglobulin receptor-associated protein-like

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0008201 heparin binding molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function

KEGG:

id description
K22290 LRPAP1; alpha-2-macroglobulin receptor-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934139.1 False 1157 mRNA 0.51 10 79786630 79802415
XM_036934138.1 True 1219 mRNA 0.50 10 79786630 79802558

Neighbor

gene id symbol gene type direction distance location
LOC118936793 LOC106591370 coding downstream 456124 79291191 ~ 79330506 (-)
LOC110511089 LOC106591771 coding downstream 549461 79222288 ~ 79237169 (-)
LOC110511088 LOC106592313 coding downstream 564427 79212795 ~ 79222203 (-)
LOC118936937 NA coding downstream 598854 79186013 ~ 79187776 (-)
LOC110513570 NA coding downstream 603067 79175205 ~ 79183563 (-)
LOC118936938 LOC106610425 coding upstream 288004 80090562 ~ 80094309 (-)
LOC118936799 LOC106610425 coding upstream 340136 80142694 ~ 80145965 (-)
LOC118936800 LOC106610425 coding upstream 358055 80160613 ~ 80163884 (-)
LOC110519670 LOC106610423 coding upstream 442525 80245083 ~ 80349169 (-)
LOC118936801 LOC106610411 coding upstream 445557 80248115 ~ 80249110 (-)
G928047 NA non-coding downstream 110 79783389 ~ 79786520 (-)
G928066 NA non-coding downstream 13444 79772276 ~ 79773186 (-)
G928041 NA non-coding downstream 64387 79722006 ~ 79722243 (-)
G928038 NA non-coding downstream 70514 79715917 ~ 79716116 (-)
G928036 NA non-coding downstream 71937 79714276 ~ 79714693 (-)
G928078 NA non-coding upstream 18339 79820897 ~ 79821214 (-)
G928079 NA non-coding upstream 23182 79825740 ~ 79826228 (-)
G928083 NA non-coding upstream 34288 79836846 ~ 79837235 (-)
G928092 LOC108260735 non-coding upstream 53498 79856056 ~ 79857237 (-)
G928094 NA non-coding upstream 79888 79882446 ~ 79883581 (-)
G927980 LOC106591517 other downstream 198765 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 228675 79554714 ~ 79559828 (-)
G927893 NA other downstream 413758 79372116 ~ 79372872 (-)
G927673 NA other downstream 504840 79274693 ~ 79281790 (-)
LOC110517091 pi4k2b other upstream 802211 80580548 ~ 80610829 (-)
G928558 LOC106590778 other upstream 845818 80648376 ~ 80652202 (-)
LOC110516987 LOC106597865 other upstream 850434 80652992 ~ 80687561 (-)
G929479 NA other upstream 920937 80723495 ~ 80724244 (-)
G929489 NA other upstream 944912 80747470 ~ 80747858 (-)

Expression


Co-expression Network