LOC118936938 (LOC106610425)


Basic Information

Item Value
gene id LOC118936938
gene name LOC106610425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80090562 ~ 80094309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034364.1
GAGGATGGAAGAAGCTTGGTAGCAGTTGTTACTACGTCTCTACTGAGAAAAAATCCTGGGAGGAGAGCAGACAGGACTGCAGAAATAGAGGAGCACACCTGGTTGTCATCAAGAACCAAGAACAACAggtgtgtgtggtacagagaaataagagagggagatagagagagtgacagagaaagagtgagagagagattgacagacagacagagagattaacagacagtaaatctcagtaaaacCATGAATACAAATTCTGTCTAGACAACATTGCCCAAAACAATACTACATCCCTCGGTCTCTACTGAGAAAAAATCCTGGGAGGAGAGCAGACAGGACTGCAGAAATAGAGGAGCACACCTGGTGGTCATCAAGAGCCAAgaacaacagACATTAGTCAATTGGTTATGCGGGGTAAAGAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACGACACACCACTGACCAGAAAttATTGGAACAGTAAAGAGCCTAATGGTGGTGGAGCAGAGAACTGTGTGTATTTCTACTCTTGGTCAGCAGACACAGGAGAATGGTGggactattactgttactataaatTCAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACTCTCTGAACTGCTAAATAAGATTATGCTAAGTACTATCAATGAGAAACTATTTCCTGCTTATTCATTTACCTTGTCAACTACATACAATATATAACAAGACAAATGTAGAATACATTATAATAAAACTATATGCAATAACAACACAATGACTTGATAAGAGAAGGACTGTTCGGTCTGTTGTTGAGGAAATTCACCACGAAGGACTCAAATTCAAAGGAAATTAATCAATCTTTATTATCACAGTCAGAGGTTCACTGACTCAAAACAATCCTGATGTTaatgtttattattattactttttacttTAGTCTACTTGCTAAATATTTGTCTTAACTCTTCCCGAactgcactgtttgttaagggcttgtaagtcagcatgtcacagtaaagtctacacttgttgtattcgtgGCATattgacaaataaagtttgatttgatttgaagtcatTGAAGTACGGTTGGTTCCTGCATGAGACTGACTGATACCACACCAGGCTTCTTACCTTGACACTGAGATACTCCTTTTGGTTCCCAGAGCAAT

Function

NR:

description
PREDICTED: CD209 antigen-like protein C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034364.1 True 1193 mRNA 0.40 3 80090562 80094309

Neighbor

gene id symbol gene type direction distance location
LOC110531688 lrpap1 coding downstream 288004 79786630 ~ 79802558 (-)
LOC118936793 LOC106591370 coding downstream 760056 79291191 ~ 79330506 (-)
LOC110511089 LOC106591771 coding downstream 853393 79222288 ~ 79237169 (-)
LOC110511088 LOC106592313 coding downstream 868359 79212795 ~ 79222203 (-)
LOC118936937 NA coding downstream 902786 79186013 ~ 79187776 (-)
LOC118936799 LOC106610425 coding upstream 48385 80142694 ~ 80145965 (-)
LOC118936800 LOC106610425 coding upstream 66304 80160613 ~ 80163884 (-)
LOC110519670 LOC106610423 coding upstream 150774 80245083 ~ 80349169 (-)
LOC118936801 LOC106610411 coding upstream 153806 80248115 ~ 80249110 (-)
LOC110511271 LOC106602098 coding upstream 399787 80494096 ~ 80532152 (-)
G928230 NA non-coding downstream 17152 80070746 ~ 80073410 (-)
G928216 NA non-coding downstream 32306 80057996 ~ 80058256 (-)
G928213 NA non-coding downstream 54632 80035716 ~ 80035930 (-)
G928208 NA non-coding downstream 60575 80028808 ~ 80029987 (-)
G928204 NA non-coding downstream 64954 80024809 ~ 80025608 (-)
G928283 NA non-coding upstream 2288 80096597 ~ 80251010 (-)
G928276 NA non-coding upstream 24317 80118626 ~ 80220508 (-)
G928297 NA non-coding upstream 38063 80132372 ~ 80183067 (-)
G928369 NA non-coding upstream 232187 80326496 ~ 80392544 (-)
G928383 NA non-coding upstream 281457 80375766 ~ 80416485 (-)
G927980 LOC106591517 other downstream 502697 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 532607 79554714 ~ 79559828 (-)
G927893 NA other downstream 717690 79372116 ~ 79372872 (-)
G927673 NA other downstream 808772 79274693 ~ 79281790 (-)
LOC110517091 pi4k2b other upstream 510460 80580548 ~ 80610829 (-)
G928558 LOC106590778 other upstream 554067 80648376 ~ 80652202 (-)
LOC110516987 LOC106597865 other upstream 558683 80652992 ~ 80687561 (-)
G929479 NA other upstream 629186 80723495 ~ 80724244 (-)
G929489 NA other upstream 653161 80747470 ~ 80747858 (-)

Expression


Co-expression Network