LOC118936799 (LOC106610425)


Basic Information

Item Value
gene id LOC118936799
gene name LOC106610425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80142694 ~ 80145965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034254.1
CCTGGTGGTCATCAAGAGCCAAgaacaacagACATTAGTCAATTGGTTATGTGGACGAAATAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACGACACACCACTGACCAGAAAgtattggaaacGTGGAGAGCCTAATGGTGgagcagcagagaactgtgtgTATTTCTACTCCTGGTCATCAGACACAGGAGAATGGTGggactattactattactataaaTTCAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACTCTCTGAACTGCTAAATAAGATTATGCTAAGTACTATCAATGAGAAACTATTTCCTGCTTATTCATTTACCTTGTCAACTACATACAATATATAACAATACAAATGTAGAATACATTATAATAAAACTATATGCAATAACACAATGACTTGATAAGAGAAGGACTgttctgtctgttgttgaggaAATTCACCACGAAGGACTCAAATTCAAAGGAAATGAATCAATATTTATTATCACAGTCAGAGGTTCACTGACTCAATACAATCCTGATGttcatttttcttatttttacttTTTAGTTTAGTCTACTTGCTAAATATTTGTCTTAACTCTTCccgaactgcactgttggttaagggcttgtaagtcagcatttcacggtaaagtctacacttgttgtattcgtggcatgtgacaaataaagtttgatttgattttaagtcATATAAGCACGGTTGGTTCCTGCATGAGACTGACTGATACCACACCAGGCTTCttaccttgaaactgagatactcCTTTTGGTTCCCAGAGCAATGTTCTGGGTGTACTGGGAAAATGCTTGTACAGTGAGTGTAAGGGatgtcgtcctcctcttctgaggaggagtagc

Function

NR:

description
PREDICTED: CD209 antigen-like protein C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034254.1 True 905 mRNA 0.39 3 80142694 80145965

Neighbor

gene id symbol gene type direction distance location
LOC118936938 LOC106610425 coding downstream 48385 80090562 ~ 80094309 (-)
LOC110531688 lrpap1 coding downstream 340136 79786630 ~ 79802558 (-)
LOC118936793 LOC106591370 coding downstream 812188 79291191 ~ 79330506 (-)
LOC110511089 LOC106591771 coding downstream 905525 79222288 ~ 79237169 (-)
LOC110511088 LOC106592313 coding downstream 920491 79212795 ~ 79222203 (-)
LOC118936800 LOC106610425 coding upstream 14648 80160613 ~ 80163884 (-)
LOC110519670 LOC106610423 coding upstream 99118 80245083 ~ 80349169 (-)
LOC118936801 LOC106610411 coding upstream 102150 80248115 ~ 80249110 (-)
LOC110511271 LOC106602098 coding upstream 348131 80494096 ~ 80532152 (-)
LOC118936802 LOC106602096 coding upstream 400849 80546814 ~ 80575383 (-)
G928230 NA non-coding downstream 69284 80070746 ~ 80073410 (-)
G928216 NA non-coding downstream 84438 80057996 ~ 80058256 (-)
G928213 NA non-coding downstream 106764 80035716 ~ 80035930 (-)
G928208 NA non-coding downstream 112707 80028808 ~ 80029987 (-)
G928204 NA non-coding downstream 117086 80024809 ~ 80025608 (-)
G928369 NA non-coding upstream 180531 80326496 ~ 80392544 (-)
G928383 NA non-coding upstream 229801 80375766 ~ 80416485 (-)
G928390 NA non-coding upstream 239258 80385223 ~ 80389063 (-)
G928394 NA non-coding upstream 247283 80393248 ~ 80394414 (-)
G928399 NA non-coding upstream 275109 80421074 ~ 80421427 (-)
G927980 LOC106591517 other downstream 554829 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 584739 79554714 ~ 79559828 (-)
G927893 NA other downstream 769822 79372116 ~ 79372872 (-)
G927673 NA other downstream 860904 79274693 ~ 79281790 (-)
LOC110517091 pi4k2b other upstream 458804 80580548 ~ 80610829 (-)
G928558 LOC106590778 other upstream 502411 80648376 ~ 80652202 (-)
LOC110516987 LOC106597865 other upstream 507027 80652992 ~ 80687561 (-)
G929479 NA other upstream 577530 80723495 ~ 80724244 (-)
G929489 NA other upstream 601505 80747470 ~ 80747858 (-)

Expression


Co-expression Network