LOC118936800 (LOC106610425)


Basic Information

Item Value
gene id LOC118936800
gene name LOC106610425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80160613 ~ 80163884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034255.1
CCTGGTGGTCATCAAGAGCCAAgaacaacagACATTAGTCAATTGGTTATGTGGACGAAATAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACGACACACCACTGACCAGAAAgtattggaaacGTGGAGAGCCTAATGGTGgagcagcagagaactgtgtgTATTTCTACTCCTGGTCATCAGACACAGGAGAATGGTGggactattactattactataaaTTCAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACTCTCTGAACTGCTAAATAAGATTATGCTAAGTACTATCAATGAGAAACTATTTCCTGCTTATTCATTTACCTTGTCAACTACATACAATATATAACAATACAAATGTAGAATACATTATAATAAAACTATATGCAATAACACAATGACTTGATAAGAGAAGGACTgttctgtctgttgttgaggaAATTCACCACGAAGGACTCAAATTCAAAGGAAATGAATCAATATTTATTATCACAGTCAGAGGTTCACTGACTCAATACAATCCTGATGttcatttttcttatttttacttTTTAGTTTAGTCTACTTGCTAAATATTTGTCTTAACTCTTCccgaactgcactgttggttaagggcttgtaagtcagcatttcacggtaaagtctacacttgttgtattcgtggcatgtgacaaataaagtttgatttgattttaagtcATATAAGCACGGTTGGTTCCTGCATGAGACTGACTGATACCACACCAGGCTTCttaccttgaaactgagatactcCTTTTGGTTCCCAGAGCAATGTTCTGGGTGTACTGGGAAAATGCTTGTACAGTGAGTGTAAGGGatgtcgtcctcctcttctgaggaggagtagc

Function

NR:

description
PREDICTED: CD209 antigen-like protein C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034255.1 True 905 mRNA 0.39 3 80160613 80163884

Neighbor

gene id symbol gene type direction distance location
LOC118936799 LOC106610425 coding downstream 14648 80142694 ~ 80145965 (-)
LOC118936938 LOC106610425 coding downstream 66304 80090562 ~ 80094309 (-)
LOC110531688 lrpap1 coding downstream 358055 79786630 ~ 79802558 (-)
LOC118936793 LOC106591370 coding downstream 830107 79291191 ~ 79330506 (-)
LOC110511089 LOC106591771 coding downstream 923444 79222288 ~ 79237169 (-)
LOC110519670 LOC106610423 coding upstream 81199 80245083 ~ 80349169 (-)
LOC118936801 LOC106610411 coding upstream 84231 80248115 ~ 80249110 (-)
LOC110511271 LOC106602098 coding upstream 330212 80494096 ~ 80532152 (-)
LOC118936802 LOC106602096 coding upstream 382930 80546814 ~ 80575383 (-)
LOC110517091 pi4k2b coding upstream 416664 80580548 ~ 80610829 (-)
G928230 NA non-coding downstream 87203 80070746 ~ 80073410 (-)
G928216 NA non-coding downstream 102357 80057996 ~ 80058256 (-)
G928213 NA non-coding downstream 124683 80035716 ~ 80035930 (-)
G928208 NA non-coding downstream 130626 80028808 ~ 80029987 (-)
G928204 NA non-coding downstream 135005 80024809 ~ 80025608 (-)
G928369 NA non-coding upstream 162612 80326496 ~ 80392544 (-)
G928383 NA non-coding upstream 211882 80375766 ~ 80416485 (-)
G928390 NA non-coding upstream 221339 80385223 ~ 80389063 (-)
G928394 NA non-coding upstream 229364 80393248 ~ 80394414 (-)
G928399 NA non-coding upstream 257190 80421074 ~ 80421427 (-)
G927980 LOC106591517 other downstream 572748 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 602658 79554714 ~ 79559828 (-)
G927893 NA other downstream 787741 79372116 ~ 79372872 (-)
G927673 NA other downstream 878823 79274693 ~ 79281790 (-)
G928558 LOC106590778 other upstream 484492 80648376 ~ 80652202 (-)
LOC110516987 LOC106597865 other upstream 489108 80652992 ~ 80687561 (-)
G929479 NA other upstream 559611 80723495 ~ 80724244 (-)
G929489 NA other upstream 583586 80747470 ~ 80747858 (-)

Expression


Co-expression Network