LOC118936381 (LOC105020813)


Basic Information

Item Value
gene id LOC118936381
gene name LOC105020813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80691018 ~ 80713764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934156.1
tCCGATAGAAACTAGAgcactacatcatcatcatcatcatcataatcgtCCTCTCCTCGAGACACGCATCAAAGTTCACGTCGCACCGAAACACAGGTGCTTTGCAGCGCGAGACCGTCGATAACGGAGTAAAAAGACTGTCCCATTTAACCGATCTAATCTCAAacatttttacatcaacagtTGTTGTTATTAATGTGAGTAGATAGGCTACAGATACCCGGTCGTTATCATGTCTGACTGCAGGAGGCAGTGGAACCGGGAGAACGAGCTGCCGGTCTACCTGGCAGGAACGATTACAACCGGGCCGAACCAACGGAAATCCTACGGGATGTTTTCCTCGGTGGATGGCGCCTGCGACAGCAAGACTGTAGACTGTGATAACTTTTCCGCGGGGAGGAGAGGAACCAGGACTCCCAGGAGCGTCAGCCGAGACAGGCTCCTTGACCACACCGATGGCGACGTTCCTGAGACGGCAATTGAGGCCAGTGAGGTCCGGGCTGTCGGTTCTCAGGTCAGCTCAcccggggagagagaggatgtgaggcCGGGTGTGGAGATTGAGTACCCGGCAGGGAGGCAGTGTCACTCCGGTCAGAAGAATGGAAAGAGTGAGAGGTTGCTGATTAAAGGGGGTCGTGTGGTGAATGACGACCTGTCTCAGTATGCAGACGTCTATGTGGAAGATGGCCTTATAAAACAGGTGGGTGATAACCTGGAGGTACCTGATGATGTGAGGGTGCTGGAGGTTAATGGAAGTCTGGTGATACCTGGAGGTATAGATGTGAACACCTGTCTGATGAAGCCTCACCTGGGCTGTTCACCTGTAGACGACTTCTACCTGGGCAGCAGGGCCGCGCTGGCCGGGGGCACCACCATGATCAttgacCATGTGACTCCTCAGCCGGGTGACAGCCTGCTGGAAGCGTTTGAGCTCTGGCAGGAGTCAGCTGACAGGAAGTGTTGCTGTGACTACTCGCTGCACGTCGACCTGCCGCACTGGCACCCGGGGGTCAAGGATGAGCTGGAGGTTCTGGTGCAGGAGAAAGggatcAACTCATTCCAGGTGTATATGTCCTATAAGGATTCGTTTCAGATGACTGATTCTCAGttGTATGAGGTGTTCTCCTCCCTGAAGGAGTTGGGGGCTGTGGTGATGCTGCATGCAGAGAACGGAGACCTCATTGCTCAGGAACAACGTAAGGTCCTCAGCCTGGGAATCACTGGACCTGAGGGACACCCCCTGAGTCACCCTGAAGAGCTGGAGGCGGAGGCAGTGTTCCGTGCCATCACCATCGGCAACAGAGTCAACTGTCCCGTCTACATCACCAAGGTGATGAGCAAGACTGCTGCCGACACCATTACCCAGGCCaggaggagagGTTCCGTTGTGTTTGGGGAGCCAATCACAGCCAGCCTGGCCACAGACGGATCGCACTATTGGAGCAAGAACTGGGCCAAGGCCGCCGCCTACGTGACATCACCGCCGCTCAGCCCCGACCCCACCACCCCAGAACACCTCCACGACCTGCTGGCCTgCGGGGACCTGCAGGTGGTTGGCAGTGCCCACTGTGCCTACAGCACGTCCCAGAAGGCCATAGGAAAAGATGACTTCACCCTGATCCCAGAAGGAACCAACGGTATCGAGGAGAGGATGGGCTTCGTCTGGGACAAGGCTgtggcCACGGGTAAGATGGATGCGAACCAGTTTGTGGCGGTGACCAGCACCAACGCTGCTAAGATCTTCAACCTGTACCCACGGAAGGGACGCATCGCTGTGGGTTCTGACGCTGACATCGTTATCTGGGACCCAGACAGGACCAAAACAATCACCTCTAAACTGCAACAGTCGGCTCTGGAGTATAACATCTTTGAGGGGATGGTGTGTCGGGGGGGTCCTGTCGTCGTGGTGACCCAGGGGAGGGTGGTctatgaggagagggaggggctcCGCGTCCAGCAGGGTTCAGGACGCTTCATCCCTCGCCAAGCCTTCCCAGACTACGCCTACCAGCGCATCACGACCAGGAGCAAGgTGAAGGGGAATCAAGGTGTGTCTCGTGGGATGTATGACGGGCCGGTGTACGATGTTCTGGCCACGCCCAAATACATAACCCCCTCCCCTTCTGCTAAAACCTCGCCCACCTCCCAACTGCCCCCACCAATTAGGAACCTCCACCAGTCCAACTTCAGCCTATCAGggGCTCAGTTTGATGACAACATTCCTCGGCGCTCTGGCCAACGCATCGTAGCGCCACCTGGTGGCCGATCCAACATCACCAACCTGGGATGAGCAGCTGGGAACATCACCTTGTTTTGTGTGTTTGGCCTCACAATATTCTAGACTCGAGGCTCATCTATGTCTGCGtcacaaattgcaccctattccctatgtagtgcactattttagaccagagccctattccctatatagtgcactattttagaccagagccctattccctatatagtgcactactatagaccagagcccatagggttcTTCATCTTTGGGCCCATATAGGGGGCATTACTGTAAGACATACAGCCGGTTTATTACaatggaaacacacacagtgtgtcAGCTCAGACACGTTGCTCCTCTTACTCCCTCTATTGGTCAGTTGAGGAACCGCAGTATGTTGCAGTATGTCCTGCAGCTGGTTTAGGTATCTTTGGTATCAGTATGTATTTCCCAGTGTGTCTCGTGTGGACCAGTGTGTCTCGTGTGGACCAGTGTGTCTCATGTGGACCAGTGTGTCCCAGTGTGTCTCGTGTGGACCAGTGTGTCTCGTGTGTCCCAGTGTGTCTCGTGTGGACCAGTGTGTCTCGTGTGGGCTGGTAACTTATCGCTTGTTTTTAGACGTTTGATTCCACTCCTGTGATACACATTTCTTTCACGTGGTATTTGACAGCACAACGATATGTATAGCTTATTATATTCATGGTGAACGTTTTCTTTCAAACACAATCATTCCCTGTGTGCAGACTGTTACTGCATACTGTGTACATACTGTTACTACATACTGTTACTGCATAC
>XM_036934157.1
CTACATTTCCAGTTGTAGCTTACTCTGTTCTGCAGTGCAGTGACGTCAGCTAGGCTGTTCCTAAAATAGGCTACGCAGATCTCTCTAGGCTGTCCACATCACCTGAACCGGTGACGGCCAGGTAGGCTATTAGGCTACGTGTGGTGATGAATTGAACAGCGCCGTTTTGACAGCTATCCCAGCTtctgtcacacacaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgaacatcgCGGCTGCTCTGACTGCACTGCACGCGAAGACAAAAGGAGGTCCTGCAGCTAGAGCGTTCCTTCCGCCTCTGAGTTCACTGGCTgcgggaaaagagagagagagagagcgagcatgtCCGGTACTGACCACCAGGGGAATGGTATCCCCCACCTTCCGAGTGAGAGGTTGCTGATTAAAGGGGGTCGTGTGGTGAATGACGACCTGTCTCAGTATGCAGACGTCTATGTGGAAGATGGCCTTATAAAACAGGTGGGTGATAACCTGGAGGTACCTGATGATGTGAGGGTGCTGGAGGTTAATGGAAGTCTGGTGATACCTGGAGGTATAGATGTGAACACCTGTCTGATGAAGCCTCACCTGGGCTGTTCACCTGTAGACGACTTCTACCTGGGCAGCAGGGCCGCGCTGGCCGGGGGCACCACCATGATCAttgacCATGTGACTCCTCAGCCGGGTGACAGCCTGCTGGAAGCGTTTGAGCTCTGGCAGGAGTCAGCTGACAGGAAGTGTTGCTGTGACTACTCGCTGCACGTCGACCTGCCGCACTGGCACCCGGGGGTCAAGGATGAGCTGGAGGTTCTGGTGCAGGAGAAAGggatcAACTCATTCCAGGTGTATATGTCCTATAAGGATTCGTTTCAGATGACTGATTCTCAGttGTATGAGGTGTTCTCCTCCCTGAAGGAGTTGGGGGCTGTGGTGATGCTGCATGCAGAGAACGGAGACCTCATTGCTCAGGAACAACGTAAGGTCCTCAGCCTGGGAATCACTGGACCTGAGGGACACCCCCTGAGTCACCCTGAAGAGCTGGAGGCGGAGGCAGTGTTCCGTGCCATCACCATCGGCAACAGAGTCAACTGTCCCGTCTACATCACCAAGGTGATGAGCAAGACTGCTGCCGACACCATTACCCAGGCCaggaggagagGTTCCGTTGTGTTTGGGGAGCCAATCACAGCCAGCCTGGCCACAGACGGATCGCACTATTGGAGCAAGAACTGGGCCAAGGCCGCCGCCTACGTGACATCACCGCCGCTCAGCCCCGACCCCACCACCCCAGAACACCTCCACGACCTGCTGGCCTgCGGGGACCTGCAGGTGGTTGGCAGTGCCCACTGTGCCTACAGCACGTCCCAGAAGGCCATAGGAAAAGATGACTTCACCCTGATCCCAGAAGGAACCAACGGTATCGAGGAGAGGATGGGCTTCGTCTGGGACAAGGCTgtggcCACGGGTAAGATGGATGCGAACCAGTTTGTGGCGGTGACCAGCACCAACGCTGCTAAGATCTTCAACCTGTACCCACGGAAGGGACGCATCGCTGTGGGTTCTGACGCTGACATCGTTATCTGGGACCCAGACAGGACCAAAACAATCACCTCTAAACTGCAACAGTCGGCTCTGGAGTATAACATCTTTGAGGGGATGGTGTGTCGGGGGGGTCCTGTCGTCGTGGTGACCCAGGGGAGGGTGGTctatgaggagagggaggggctcCGCGTCCAGCAGGGTTCAGGACGCTTCATCCCTCGCCAAGCCTTCCCAGACTACGCCTACCAGCGCATCACGACCAGGAGCAAGgTGAAGGGGAATCAAGGTGTGTCTCGTGGGATGTATGACGGGCCGGTGTACGATGTTCTGGCCACGCCCAAATACATAACCCCCTCCCCTTCTGCTAAAACCTCGCCCACCTCCCAACTGCCCCCACCAATTAGGAACCTCCACCAGTCCAACTTCAGCCTATCAGggGCTCAGTTTGATGACAACATTCCTCGGCGCTCTGGCCAACGCATCGTAGCGCCACCTGGTGGCCGATCCAACATCACCAACCTGGGATGAGCAGCTGGGAACATCACCTTGTTTTGTGTGTTTGGCCTCACAATATTCTAGACTCGAGGCTCATCTATGTCTGCGtcacaaattgcaccctattccctatgtagtgcactattttagaccagagccctattccctatatagtgcactattttagaccagagccctattccctatatagtgcactactatagaccagagcccatagggttcTTCATCTTTGGGCCCATATAGGGGGCATTACTGTAAGACATACAGCCGGTTTATTACaatggaaacacacacagtgtgtcAGCTCAGACACGTTGCTCCTCTTACTCCCTCTATTGGTCAGTTGAGGAACCGCAGTATGTTGCAGTATGTCCTGCAGCTGGTTTAGGTATCTTTGGTATCAGTATGTATTTCCCAGTGTGTCTCGTGTGGACCAGTGTGTCTCGTGTGGACCAGTGTGTCTCATGTGGACCAGTGTGTCCCAGTGTGTCTCGTGTGGACCAGTGTGTCTCGTGTGTCCCAGTGTGTCTCGTGTGGACCAGTGTGTCTCGTGTGGGCTGGTAACTTATCGCTTGTTTTTAGACGTTTGATTCCACTCCTGTGATACACATTTCTTTCACGTGGTATTTGACAGCACAACGATATGTATAGCTTATTATATTCATGGTGAACGTTTTCTTTCAAACACAATCATTCCCTGTGTGCAGACTGTTACTGCATACTGTGTACATACTGTTACTACATACTGTTACTGCATAC

Function

NR:

description
PREDICTED: dihydropyrimidinase-related protein 1 isoform X2

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934156.1 False 3040 mRNA 0.54 14 80691018 80713764
XM_036934157.1 True 2853 mRNA 0.54 14 80691701 80713764

Neighbor

gene id symbol gene type direction distance location
LOC110516989 LOC103383728 coding upstream 39040 80626746 ~ 80651979 (+)
LOC110497187 LOC106610426 coding upstream 325832 80361027 ~ 80365186 (+)
LOC110516353 LOC106610561 coding upstream 332940 80353937 ~ 80358078 (+)
LOC118936798 LOC106610412 coding upstream 669314 80016957 ~ 80021704 (+)
LOC118936797 LOC106610424 coding upstream 795247 79882915 ~ 79895771 (+)
LOC110515606 LOC106597156 coding downstream 9771 80723535 ~ 80922638 (+)
trnae-cuc-165 NA coding downstream 216332 80930096 ~ 80930167 (+)
LOC118936804 NA coding downstream 221449 80935213 ~ 80936319 (+)
LOC110514786 LOC106592710 coding downstream 228781 80942545 ~ 81014251 (+)
LOC110530284 LOC106592313 coding downstream 504211 81217975 ~ 81220397 (+)
G928500 NA non-coding upstream 14387 80676023 ~ 80676631 (+)
G928496 NA non-coding upstream 21266 80668758 ~ 80669752 (+)
G928490 NA non-coding upstream 30263 80659379 ~ 80660755 (+)
G928485 NA non-coding upstream 35678 80652714 ~ 80655340 (+)
G928593 NA non-coding downstream 6761 80720525 ~ 80721041 (+)
G928595 NA non-coding downstream 7732 80721496 ~ 80722256 (+)
G928620 NA non-coding downstream 16276 80730040 ~ 80737865 (+)
G928622 NA non-coding downstream 27382 80741146 ~ 80752064 (+)
G928626 NA non-coding downstream 33755 80747519 ~ 80747836 (+)
G928335 NA other upstream 374449 80311944 ~ 80316569 (+)
G928206 NA other upstream 662799 80027002 ~ 80028219 (+)
LOC110532970 LOC105020822 other upstream 933974 79727045 ~ 79782057 (+)
LOC110514189 LOC106593948 other upstream 1090246 79597075 ~ 79601686 (+)
G927606 NA other upstream 1406874 79281386 ~ 79284144 (+)
G928731 NA other downstream 405801 81119565 ~ 81120877 (+)
G928705 LOC106594836 other downstream 471121 81067884 ~ 81313748 (+)
LOC118936811 LOC106593215 other downstream 525333 81239097 ~ 81247351 (+)
G928757 NA other downstream 563275 81277039 ~ 81330349 (+)

Expression


Co-expression Network