LOC118936810 (LOC106596791)


Basic Information

Item Value
gene id LOC118936810
gene name LOC106596791
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81285870 ~ 81294695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934175.1
GGACCTTTAAGAACTTTCTATTGAAACttccattgagcatgctttttagttCAGCACTAGACTCAATCTGTGTCCAAGAAACAGGCCCCATATGTATTACTGACATGCTTGTCCTTGTTCAGGACTCCACACACTGGCTTGAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTGTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATTGCTCTGATACTGAGATTACTGTCTTGGAACATAGATGTCCACTGTGAGCTgatgctctatctgacagtgatAAAGGAAAAACTAATTCAACGCCTATACCTGTTTCCCAGTAACCCCGGCCAGATACAGGCTGTGGAACAACAGGAAATAAAGTTTCAAGGGTCTAAAAGGATTCCCATCACAAGACCAGAGCGGTCCTTCAAACTGAATAGTTACTTCAGACTGAACATTCCCTGTTCAACCTCCATCACTCCACCGaggATTCATCTCATACATAGAGACACCACACCAAGCTTTTTCAAGGTGGATATGGAAATTACAGGGATTGAGATGGAGTTAATCGGTGATGATGAGAGGATAGTATGGAAAGAAACTGTACAAAAATATGAATTCATCACTGAAACCCATTCAACTAGTGCTGTGTTGGGGTCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTTCAGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTGAAACGAGTATCAGGACCTGTCCTGGATGGTCTGCTGGACAGACTCCTGCAACACACAGTCATCAACCAGGAGGAAATGGAGTCAGTGAAGGTGATAGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCGTGTTCCAGGATGATCAACCTTCTTGGGAAGCTGGACGCCTATCTTTGTTCACAGCTTCAGAtcaacagtgttggggtaccaacaTAATGGTAGAATGGggacagtaacagtgttggggtaccaacccaatg
>XM_036934176.1
gagaccatggtggagagtgttgtatcaagtctggacCTGAGAAATGGATTCCTCAGAGCTGTAAGACTTGTGACCATGTTGAGGACTCCACACACTGGCTTGAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTGTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATTGCTCTGATACTGAGATTACTGTCTTGGAACATAGATGTCCACTGTGAGCTgatgctctatctgacagtgatAAAGGAAAAACTAATTCAACGCCTATACCTGTTTCCCAGTAACCCCGGCCAGATACAGGCTGTGGAACAACAGGAAATAAAGTTTCAAGGGTCTAAAAGGATTCCCATCACAAGACCAGAGCGGTCCTTCAAACTGAATAGTTACTTCAGACTGAACATTCCCTGTTCAACCTCCATCACTCCACCGaggATTCATCTCATACATAGAGACACCACACCAAGCTTTTTCAAGGTGGATATGGAAATTACAGGGATTGAGATGGAGTTAATCGGTGATGATGAGAGGATAGTATGGAAAGAAACTGTACAAAAATATGAATTCATCACTGAAACCCATTCAACTAGTGCTGTGTTGGGGTCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTTCAGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTGAAACGAGTATCAGGACCTGTCCTGGATGGTCTGCTGGACAGACTCCTGCAACACACAGTCATCAACCAGGAGGAAATGGAGTCAGTGAAGGTGATAGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCGTGTTCCAGGATGATCAACCTTCTTGGGAAGCTGGACGCCTATCTTTGTTCACAGCTTCAGAtcaacagtgttggggtaccaacaTAA
>TU1058631
atAAAGGAAAAACTAATTCAACGCCTATACCTGTTTCCCAGTAACCCCGGCCAGATACAGGCTGTGGAACAACAGGAAATAAAGTTTCAAGGGTCTAAAAGGATTCCCATCACAAGACCAGAGCGGTCCTTCAAACTGAATAGTTACTTCAGACTGAACATTCCCTGTTCAACCTCCATCACTCCACCGaggATTCATCTCATACATAGAGACACCACACCAAGCTTTTTCAAGGTGGATATGGAAATTACAGGGATTGAGATGGAGTTAATCGGTGATGATGAGAGGATAGTATGGAAAGAAACTGTACAAAAATATGAATTCATCACTGAAACCCATTCAACTAGTGCTGTGTTGGGGTCAGGAGGTCCGGCTGAGAGCAGTCTGACTGGTTCTTCAGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTGAAACGAGTATCAGGACCTGTCCTGGATGGTCTGCTGGACAGACTCCTGCAACACACAGTCATCAACCAGGAGGAAATGGAGTCAGTGAAGGTGATAGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCGTGTTCCAGGATGATCAACCTTC
>TU1058653
gattaagtctagTCCTGGACCTTTAAGAACTTTCTATTGAAACttccattgagcatgctttttagttCAGCACTAGACTCAATCTGTGTCCAAGAAACAGGCCCCATATGTATTACTGACATGCTTGTCCTTGTTCAGGACTCCACACACTGGCTTGAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTGTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCC

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 1b allele 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934175.1 False 1324 mRNA 0.46 7 81285870 81293663
XM_036934176.1 False 1241 mRNA 0.47 9 81285914 81294695
TU1058631 False 616 TUCP 0.46 5 81285979 81292744
TU1058653 True 531 TUCP 0.46 3 81292829 81293679

Neighbor

gene id symbol gene type direction distance location
LOC110530955 LOC106592313 coding downstream 11891 81194601 ~ 81273979 (-)
LOC110515418 LOC106592313 coding downstream 22833 81255544 ~ 81263037 (-)
LOC118936814 LOC106590958 coding downstream 94733 81185283 ~ 81191137 (-)
LOC118936807 LOC106958643 coding downstream 102701 81074922 ~ 81183169 (-)
LOC118936806 NA coding downstream 210961 81073063 ~ 81074909 (-)
LOC118936808 LOC106592313 coding upstream 1991 81296686 ~ 81307853 (-)
LOC110510685 LOC106590958 coding upstream 18121 81312816 ~ 81329120 (-)
LOC118936813 LOC106597603 coding upstream 45675 81340370 ~ 81349834 (-)
LOC118966662 LOC106592313 coding upstream 55624 81350319 ~ 81363632 (-)
LOC118936812 LOC106592313 coding upstream 108364 81403059 ~ 81407656 (-)
G929702 LOC106593215 non-coding downstream 32989 81245494 ~ 81252881 (-)
G929697 NA non-coding downstream 50353 81228637 ~ 81235517 (-)
G929683 NA non-coding downstream 124983 81160307 ~ 81160887 (-)
G929681 NA non-coding downstream 134686 81150615 ~ 81151184 (-)
G929679 NA non-coding downstream 144491 81139624 ~ 81141379 (-)
LOC118936809 LOC106592313 non-coding upstream 37362 81332057 ~ 81429068 (-)
G929715 NA non-coding upstream 56521 81351216 ~ 81351632 (-)
G929716 NA non-coding upstream 58288 81352983 ~ 81353273 (-)
G929724 NA non-coding upstream 83683 81378378 ~ 81379628 (-)
G929727 NA non-coding upstream 115589 81410284 ~ 81445303 (-)
G929509 NA other downstream 466329 80818849 ~ 80819541 (-)
G929489 NA other downstream 538012 80747470 ~ 80747858 (-)
G929479 NA other downstream 561626 80723495 ~ 80724244 (-)
LOC110516987 LOC106597865 other downstream 628454 80652992 ~ 80687561 (-)
G928558 LOC106590778 other downstream 633668 80648376 ~ 80652202 (-)
G929725 NA other upstream 85078 81379773 ~ 81380584 (-)
G929726 NA other upstream 94045 81388740 ~ 81389499 (-)
G929783 NA other upstream 343230 81637925 ~ 81639420 (-)
G929913 NA other upstream 785186 82079881 ~ 82082138 (-)

Expression


Co-expression Network