LOC110510685 (LOC106590958)


Basic Information

Item Value
gene id LOC110510685
gene name LOC106590958
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81312816 ~ 81329120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934184.1
tctctggggagagagaggaggagaccacggcctctaaaatgagtctctctggggagagagaggaggggaccacTGACTCTAAAATGACTCAAGACACCAGTTCTAAGTGTGTCCAGAAGCCCAGAGCAGAGTCCCCTACAACCAGCCTGCTATCAATGAAGAGTGATCAGCCACCTGCTTTCAGCCAGGAACCATTACCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTGAGGATGTATTAAATATCACACACAACCTTCTGGACAGAAGAAGTCAAACTCTGCTGACAGTCCAACAAGACGTTAAGGCTAAACTGAAACACAAGTATCAACACATTGGAATTGGACACCATGGAAATCAAAGTTTGTTCAAGGAcatctacacagagctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGTCATCCAAGAAACTAACCACACAAGAGACACAAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTACTGACCAAAGGAAtcgctggcattggaaaaacatTCTCTGTGCAGAAGGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCTCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACCAAAACTGTTTTCATttttgatggtctggatgagtgtCGACTTCCTCTAGACTTCAAAAACAATGAGAAATGCTGTGATGTCACGGAGCCAACCTCAGTGGACGTGCTGCTGACAAATCTCATCAAGGGGaatctgcttccctctgctctcaTCTGGATAACCTCAAGGCCTGCAGCAGCCAATCAGATCCCTCCTGAGTGTGTTGACCAGAtgacagaggtacgagggttcaatgaTCCACAGAAGGAGGAGTATTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAACACATGaagacatcaaggagcctccacatcatgtgccacatgCCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATGCTGAAAGAGGCAGAGAAGGATGAAGTCCCCAAAACTCTGACCCAGATGTACTCACACTTCATGATCCAAATCATTGTGGAGAACAGGAAGTACAACAAAGCCACAGAGACAAACCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAGCTGGCTTTCCAACAGCTGCAGAAGGGCAACCTGATCTTCTATGAGGAGGACCTGAGAGAGTGTGGCCTTGATGTCACAGAGGCATCAGAGTACTCAGCATTGTGTACAGAGATCTTTAAAGAAGAATCTGGGCTGTACCAAGACAAGGTCTACAGCTTTGTGCATCTGAGCATTCAAGAGTTTCTAGCAGCAGTGCATGCTTTAGAAACATGTCTGTGCAAGAAGGAAAATGTTTTCTCCCCCAAAGCAGTCACTAAGGGTCAAGATTATTATGAAAACAGCCGATTCAAATTCTGGTCGTGCAAGTTGAAGCCTGACAAGTTGACGTCAATCGATGATAATGATTCCGATGATGATGATTCCGATGAAGACAAAAAGGATGACAATGATAAAGAGGAGTCAATCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGATTGGACACCTGGACCTGTTCCTCTGCTTCCTTCTGGGTCTCTCACTGGCGTCCAATCAGAATCTGTTACGAGGCCTTCTGACACAGACAGGATGTACCACACAGACCAATGAGGAAACAGTTGAGAGAACAGTCAAGTACCTTACAGACAACATCAAGGAGGAATCCTCACCAGAAAGGATCATCAACttgttccactgtctgaatgaacttGGTGCCAACTCTCTTGTTGAAGACATGCAGACCTCCCTGCATTCAGGaactctttcaaaaacaagactAAAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagTTTGACCTGAAAACATACAACACATCAGAGAAAGGTTATCAGAGGTTGCTGTCGGTAGTGAGAACCTGCAAGAGAGCACTACTGGAAAGCTGTAAACTCACATATAAATCCTGTGAGACTCTGACCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGCCCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATAAAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAACTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTGCTGTCTGCTGGACTGGTGgatccagactgtaaactacaCACACTGGGgctgtctggctgtctggtcACAGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagactctGCAGGGGGACTGCTTTCAACTGCTCTGGTGGATCCCACATATAAACTGATGAAGCTGAATGTGGATCATGTTGGAGAGTGCAGGCTGAAATCAGGGCTGAGGAAATATGCCTGTCATCTCACCCTGGACCCAGATACAGCACACCCACACCTGAGACTGTCTGAGGGGAACAGGAAGGTGACACGGGTGTTGAAGGAGCAGCATTATGAAGACCATCCAGACAGATTTGATTGTCATTGCCAAGTTGTATGCAGTGAAGTCATTTCTGGATGTCGTTATTACTGGgaggtggacagggatggtgacATGGCTGACATTGGTGTGGTGTACAAAGGAATGAAGAGGAAGGGACGGGAGGATGACAGTTGGATTGGACTCAATAGGAAGTCCTGGTGTTTATACTGCTATGATAGTGCTTATGAATTTATCCATGCTGGAGTCAGCAGATCCATCTCTGGTCGTTATTCTCACAGAGTTGGAGTATATCTGGACTGGCCAGCTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTACACTGACACACCttcacacagaacacaccacatTCACTGAACCCCTCTATCCTGGATTTGGGGtttactcctcctcctcagtgacccTGTGTCAGATAGATGACCAACACATTCAGAGagaccatggtggagagtgttgtatcaagtctggacCTGAGAAATGGATTCCTCAGAGCTGTAAGACTTGTGACCATGTTGAGGACTCCACACACTGGCATCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtaATTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGATGTCACCAGATTCCATGCTAAGATTCTCCATCCCAAGTTCTCAGCTATCTCTGTTATACTGAGATTACTGTCTTGGAACATAGATGTCCACTGTGAGCTgatgctctatctgacagtgatAAAGGAAAAACTAATTCAACGCCTATACCTGTTTCCCAGTGACCCCGGCCAGATACAGGCTGTGGAACAACAGGAAATAAAGTTTCAAGGGTCTAAAAGGATTCCCATCACAAGACCAGAGCGGTCCTTCAAACTGAATAGTTCCTTCAGACTGAACATTCCCTGTTCAACCTCCATCACTCCACCGaggATTCATCTCATACATAGAGACACCACACCAAGCTTTTTCAAGGTGGATATGGAAATTACAGGGATTGAGATGGAGTTAATCGGTGATGATGAGAGGATAGTATGGAAAGAAACTCTACAAAAATATGAATTCATCACTGAAACCCATTCAACTAGTGCTGTGTTGGGGGCAGGAGGTCCGGCTGAAAGTAGTCTGACTGGTTCTGCAGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTGAAACGAGTATCAGGACCTGTCCTGGATGGTCTGCTGGACAGACTCCTGCAACACACAGTCATCAACCAGGAGGAAATGGAGTCAGTGAAGGTGATAGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCAAGTTACAGGATGATCAACTTATTTGGGGAACTGGACGCCTATCTTTGTTCACAGCTTCAGAtcaacagtgttggggtaccaacaTAATGGTAGAATGGGGACAGTAtcagtgttggggtaccaacccaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagtaacagtg
>TU1058642
GGGAAGGCCCAAATACGTGTGTCttgtcaacagtatactgctcCGTCTAGTATTGAGTTAAAGAGACTATCAGGGCCCTTAAACAGGACATCACATCTATTGAATTGAAGTTGCTCACTCAGATGGACCCCGGAGCCCCTGGCATCAATGTTTTACAATCTGAGTTCTATAAGCACTGGGGTGCTACCCCAGCTGTCTATTGGGGGGGATTTTTATGAAGTGGTGTGTGAATCTTGTCATGAGTAttctcttcctgtatcctgtcAACGTGTTGTGCTTTCATTGTTGCAAAAGGGGGGGGATTTGGCCCTTTTAAAAAAAACTGCCAACTTGTTGCATTGCTGTGTGCAGAATTTTAAATGATATCTACGTGTCTCTCAAACAGGTATATAGAATGAAGAAGGCTTTTGATCGTGTGGACCACCATGTTTAAAACAATGAAAGCCTttgggtttggggatgttttttttgtcttggaTGAGTTTACTGTCTGCTGGGGCCTCGTGTATGGGGAGGGTGGGTTGAGCTGCCCCATCCCCATCCAAAGGGGcatcaggcagggatgcccaatttcaggactgatatattgtctaaagttaaactgttacattggtgccgtgacccggatcactggttgctgcggaaaaggaggaggtcaaaagggaggtgagtgtaaccggtgtgaaatggctagctagttagcggtggtgcgcgctaatagcatttcaatcagtgacgtcacttgctctaagaccttgaagtagtggttccccttgctctgcaagggccacggcttttgtggggcgatgggtaacgatgccaagagggtgactgttgacgtgtgcagagcgtccctggttcgcgcccaggttggggcgaggggATGGGTGTAAAGTCTAAACTGTTACACAAGGCCTGGTGGACATCTCTTCTTGGATCATGGCTTTCTGGCTTCatgcagcccagagactgttgtactgtGACGGTTCTAGCTGGGTGGATACAGCCGACACATTGATGAGGAGAGCAGGCTGTTTGGCTTAGACAAGCAACTTTTCCTCTTAAAGCTGGAGGGGGGTGATTTGTCTGGCCTGACTCCATTCTATGAGTCTGTTATGCAGGCTTGGAGAGTTTCCTCTTGAAGCTGGAGGGGGGGTGATTTGTCTGGTCTGACTCCATTCTATAAGTCTGTTATACAGGCTTGGAGAGTTTTCACCATGTTGGGGATGGGTGTCCATTCTGTGCTGAGTCTAAAACTCTGACACATCTGTTCTTACAGTGTCCCAGGTTGGTCGAGATGATTGACCTGATCACTGGTTGGTTCTCAGCTCTGGGAGAGGTTTTTTCTTCCCAAATGTTTATATTTGGGACAAAGTACAGGTTTAGTAGAAGGGGTGTTGTTCTCTTACTTAACTTTGTGTCAGGGGCAGCTAAATTATCAATTTGATAGACATGAAAGAACAGTATTCGGGAACAGGGGACTGTGGACGTGGTGGGAATGCTGGAGGGGATGTTGGCAGCCAGACTGAGGGTTGAGTTTGCCTGTTACAAAATGGTTAACATTGATCTGTTTGAGTATATGGGGTATTTAGAGGCTGTTGTTTTTAGTTACTGTGGCGGAAGATTTGGTGTTGTGTTTTTAATTAATGTTTAACCATGTTTTTGTttaacctctctcgctctctctccctccctccccccagaggATTCATCTCATACATAGAGACACCACACCAAGCTTTTTCAAGGTGGATATGGAAATTACAGGGATTGAGATGGAGTTAATCGGTGATGATGAGAGGATAGTATGGAAAGAAACTCTACAAAAATATGAATTCATCACTGAAACCCATTCAACTAGTGCTGTGTTGGGGGCAGGAGGTCCGGCTGAAAGTAGTCTGACTGGTTCTGCAGAGCAGCAGCTGCGTTCTGTACGGACAGAGTTTGTGAAACGAGTATCAGGACCTGTCCTGGATGGTCTGCTGGACAGACTCCTGCAACACACAGTCATCAACCAGGAGGAAATGGAGTCAGTGAAGGTGATAGCTGAGAGGGCAGAGAAGGCACGTGACATCATCGACATGGTGTTGAGAAAAGGAACTGAGTCAAGTTACAGGATGATCAACTTATTTGGGGAACTGGACGCCTATCTTTGTTCACAGCTTCAGAtcaac
>TU1058632
TCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtaATTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGATGTCACCAGATTCCATGCTAAGATTCTCCATCCCAAGTTCTCAGCTATCTCTGTTATACTGAGATTACTGTCTTGGAACATAGATGTCCACTGTGAGCTgatgctctatctgacagtgatAAAGGAAAAACTAATTCAACGCCTATACCTGTTTCCCAGTGACCCCGGCCAGATACAGGCTGTGGAACAACAGGAAATAAAGTTTCAAGGGTCTAAAAGGATTCCCATCACAAGACCAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934184.1 False 4656 mRNA 0.47 17 81312816 81329120
TU1058642 False 2174 TUCP 0.47 3 81312934 81316081
TU1058632 True 539 TUCP 0.46 3 81318565 81319448

Neighbor

gene id symbol gene type direction distance location
LOC118936808 LOC106592313 coding downstream 4963 81296686 ~ 81307853 (-)
LOC118936810 LOC106596791 coding downstream 18121 81285870 ~ 81294695 (-)
LOC110530955 LOC106592313 coding downstream 38837 81194601 ~ 81273979 (-)
LOC110515418 LOC106592313 coding downstream 49779 81255544 ~ 81263037 (-)
LOC118936814 LOC106590958 coding downstream 121679 81185283 ~ 81191137 (-)
LOC118936813 LOC106597603 coding upstream 11250 81340370 ~ 81349834 (-)
LOC118966662 LOC106592313 coding upstream 21199 81350319 ~ 81363632 (-)
LOC118936812 LOC106592313 coding upstream 73939 81403059 ~ 81407656 (-)
LOC110528616 LOC106591987 coding upstream 78613 81407733 ~ 81415745 (-)
LOC118936809 LOC106592313 coding upstream 87900 81332057 ~ 81429068 (-)
G929651 NA non-coding downstream 1280 81283784 ~ 81311536 (-)
G929709 NA non-coding downstream 7120 81278247 ~ 81305696 (-)
G929711 NA non-coding downstream 21278 81289657 ~ 81291538 (-)
G929702 LOC106593215 non-coding downstream 59935 81245494 ~ 81252881 (-)
G929697 NA non-coding downstream 77299 81228637 ~ 81235517 (-)
G929715 NA non-coding upstream 22096 81351216 ~ 81351632 (-)
G929716 NA non-coding upstream 23863 81352983 ~ 81353273 (-)
G929724 NA non-coding upstream 49258 81378378 ~ 81379628 (-)
G929727 NA non-coding upstream 81164 81410284 ~ 81445303 (-)
G929509 NA other downstream 493275 80818849 ~ 80819541 (-)
G929489 NA other downstream 564958 80747470 ~ 80747858 (-)
G929479 NA other downstream 588572 80723495 ~ 80724244 (-)
LOC110516987 LOC106597865 other downstream 655400 80652992 ~ 80687561 (-)
G929725 NA other upstream 50653 81379773 ~ 81380584 (-)
G929726 NA other upstream 59620 81388740 ~ 81389499 (-)
G929783 NA other upstream 308805 81637925 ~ 81639420 (-)
G929913 NA other upstream 750761 82079881 ~ 82082138 (-)
G929889 NA other upstream 779304 82108424 ~ 82109749 (-)

Expression


Co-expression Network