LOC110510686 (LOC106597603)


Basic Information

Item Value
gene id LOC110510686
gene name LOC106597603
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81373583 ~ 81386366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934170.1
cttaTGAGTCCCAACTCTCATTGTTTTCCTACAGGTCAAACTCTGCTGACAGTCCAACAAGACATTAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAAGAcatctacacagagctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAAGAAACAAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCaatcagaactgtgctgacaaaaGGAAtcgctggcattggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAGGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCCCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACCAAAACTGTTTTCATTTTTGATGGTCTGGACGAGTGTCGACTTCCTCTAGACTTCAAAAACAATGAGAAGTGCTGTGATGTCACGAAGCCAACCTCAGTGGACGTGCTGCTGACAAACCTCATCGAGAGGAATCTGCTTCCCTGTGCTCTCCTCTGGATAACCTCACGGCCGGCAGCAGCCAATCAGATCCCTACTGAgtgtgttgaccaggtgacagaggtgCGAGGGTTCAATGATCCACAGAAGGAGGAGTATTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAGCACATGAAGACATCAAGGAGCCTCTACATCATGTGCCACATGCCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATACTGAACGAGGCAGAGAAGGATGAAGTCCCCAAAACTCTGACCCAGATGTACTCACACTTCATTCTCATCCAAATCATTGTGAAGAACAGGAAGTACAACAAAGCCACAGAGACAAACCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAACTGTCTTTCCAACAGCTGCAGAATGGCAACCTGATCTTCTATGAGGAGGACCTGAGAGATTGTGGTCTTGATGTCACAGAGGCATCAGAGTACTCAGCATTGTGTACAGAGATCTTTAAAGAAGAATCTTTGCTGTACCAAGACAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTAGACAAGAAGGAAAATGTTTTCTCCCCCACTAGTGATGATGAAGAGAAGGAGTCAACCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaacCTGTTACGAGGCCTTCTGACACAGACAGGAGGTACAACACAGACCAATGAGGAAACAGTTGAGAGAACAGTCAGGTACCTTTCATACAACATCAAGGAGGAATCCTCACCAGAAAGGATCATCAACttgttccactgtctgaatgaacttGGTTCCAACTCTCTAGTTGAAGACATGCAGACCTCCCTGCGATCAGGAACTCTTTCAGAAACAAGACTAGAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagCTTGACCTGAAGACATACAACACAACAAAGGATGGTTATCAGAGGTTGCTGCCGGTAGTGAAAACCTGCAAGAGAGCACTACTGGTTGACTGTGAACTCACATATAAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGAAGACagaggagtgaagctgctctgtGTTGGACTAACCAGTTCACTCTGCAGCATACAGATACTAGTacTGGCTGAATGCGAACTCACATATGAATCCTGTGAGACTCTGACCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGAAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAGCTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGgctgtcttgcTGTCTGGTCACGGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagactctGCAGGGGGCCTGCTTTCAGCTGCTCTGATGGATCCCACATATAAACTGATGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGTTGAAATCAGGGCCGAGGAAATATGCCTGTCATCTCACCCTGGACCCAGATACAGCACACCGAAACCTGATACTGTCTGAAGGGAACAGGAAGGTGACATTGGTTGAAGAGAAGCAGCATTATGAAGACCATCCAGAAAGATTTGATTGTCGTCCCGAAGTTCAATACCCTTCAATACCCTTTAATTGTCGTTACCAAGTTCTCTGCAGAGAAGGCTTATCTGGAGGTCATTATTACTGGGAGGTGGAGATGAATGGTGACAAGGCTGTCATTGGTGTGGCGTCCAAAGGAATGAAGAAGAAGGAATGGTCCTGCTGGTTATTCTGCTCTAATGATATATATATCTTTAGACATAGTGGATGCAACATCATCTGCAGATCCATCTCTGATCCAGATACTTTTCCTGTTTCTAAGAGAGTtggagtgtatctggactggccagcTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTACACTGACACACCTTCACACAGAACACGCCAGATTCACTGAACCCCTCTATCCTGTATTTGGTatttactcctcctcctcagtgacccTGTGTCAGATAGATGACCAACACATTCAGAGagaccatggtagAGAGAGTTGGATCAAgtctggacctgaggacaccagagaccatggtggagagagttggatcAAGTCTGaacctgaggacaccagagaccatggtggagagagttgtatCGAGCCTGAACCTGAGAACACCAGAGACCACGGTGGAGAGAGTTgtatcaagcctggacctgaggacaccagagaccatggtggagagtgtTGTATCAAGCCtagacctgaggacaccagagaccatggtggagagagttggatcaagcctggacctgaggacaccagagaccatggtggagagagttggatcaagcctggacctgaggacaccagtgACCATGGTGGAGAGTGTTGTATCAAGCCTGGACCTGAGAAATGGATTCCTCAGACCTGTAAGACTTGTGACCATGTTGAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCGCTCTGATACTGAGATTACTGTCTTGGAACTTAGATGTCCACTGTGACGTGGTCCTCTATATGGCAGTAAAAAAGTCAACAGTCATTTCAAGGCTGTACCTGCTCCTCAGAAACTCCAGTCAGAAAGAGGCTGTTCAGGAACGGGAGAAAAATCAGGTGTCCAAAGGATTTTCAGAATTCGTCCTGTCAAGTCCAAACGGGTCCTTAAAGCTAAACAGTTGGTTTGCGTTCAAGAATCCCCTCTCCACTTCCATCAATCCAAAGGTGCAGTTTTATCAGGCTGAGGACATGAATCTGTCATATTGTATATGAATAACTGGAATGTCATTCTATttcactatttctctctctctctctctgtctctctctgttgtctcaaTCGTTGCACCATATGGCCTCCTACAGAAGATTCAGCTGTTACCTGCAGACACCACACCAAGCTGTTGTCAGATGATAATGGGAAACACAGGGGTGGACATTGAGATGGAGTTAATCGGGGATGATGAGAGGACAGTATGGAAATCAGTGTTATCAAAAGATGTGTACAGCAACGACTCTCATCCAACATCATTAACACTCCTTGGGATTCCTGCTGAGGAGTTTCTGAAGAAACACAGGGCTGAACTCATTCAGGGAGTCAAAAACACAAATCCAATAGCAGATGTTCTGCAGTCAAAATACATGATTGGTGATGAAGAGTACTCCAGAATAAAAGCTGAAACAACTGAACAGGAGCGAATGAGAGAACTACTGAACGCAGTCCTCCCTAAAGGACCAGAAGTGATGGGAGCTTGTCTCAAAGCTCTTAGTGAACATGAACACCATCTTGTTAAGTACTTGAGT
>TU1057347
gttctgctttagtaatataaacacagtctcaaagccaggtgtgtactgaccaaccattcatactgggatatagacagtcctgtgttctgctttagtaatataaacacagtcTCAAAGCCAGGTGTGTACTGACCAACCATTCATGCTGGGATATAGACAGTCCTGTGTTCTGCTTGTAGGCATGCAGGATTTTACCTGTTGTCATATTTTGTCATTAGACAGTTTAATTGATAATTCACCAGCATTCCATGTAACATTGAATAAATACATTAGATGAGTTACTTTGGTTaatgggccagtttcccagacacagattaagtctagTCCTGGACCTTATAGAACTTTCTATTGAAACttccattgagcatgctttttagtccagcacTAGACTctatctgtgtccaggaaacaggCCCCATATGTATTACTGACATGCTTGTCCTTGTTCAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTC

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 1b allele 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934170.1 False 4824 mRNA 0.47 16 81373583 81386366
TU1057347 True 851 TUCP 0.43 3 81382209 81383375

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 126232 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 153186 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 359332 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 437522 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 443416 80930096 ~ 80930167 (+)
LOC110518956 LOC106595358 coding downstream 100230 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 116843 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 140148 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 172378 81558744 ~ 81615329 (+)
LOC118936819 LOC106602658 coding downstream 231094 81617460 ~ 81672338 (+)
G928846 NA non-coding upstream 10404 81360793 ~ 81363179 (+)
G928756 NA non-coding upstream 17466 81271764 ~ 81356117 (+)
G928830 NA non-coding upstream 19354 81298367 ~ 81354229 (+)
G928840 NA non-coding upstream 19977 81323533 ~ 81353606 (+)
G928782 NA non-coding upstream 20744 81263442 ~ 81352839 (+)
G928853 NA non-coding downstream 5347 81391713 ~ 81393673 (+)
G928750 NA non-coding downstream 20357 81406723 ~ 81439976 (+)
G928784 NA non-coding downstream 22820 81409186 ~ 81445032 (+)
G928865 NA non-coding downstream 43963 81430329 ~ 81432413 (+)
G928868 NA non-coding downstream 67045 81453411 ~ 81453725 (+)
G928765 NA other upstream 23252 81349536 ~ 81350331 (+)
G928757 NA other upstream 43234 81277039 ~ 81330349 (+)
G928705 LOC106594836 other upstream 59835 81067884 ~ 81313748 (+)
G928731 NA other upstream 252706 81119565 ~ 81120877 (+)
G928929 NA other downstream 267025 81653391 ~ 81654391 (+)

Expression


Co-expression Network