LOC118936817


Basic Information

Item Value
gene id LOC118936817
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81503209 ~ 81504564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034263.1
gtgaggatatgaccagtgacttggtctatagagagtagaggagaggtccatcctcatagcagtgataggagagatcatgtgaggatatgaccagtgacttggtctatagagagaagaggagaggtccaTCCTCATAGCAGTGATAGGAGAGATCATGTGAGGAAAtgaccagtgacttggtctagagagagaagaggagaggtccaTCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTtagtgtatagagagaagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgagtgcctatagagagaagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgaGTGACTTAGAGAGGAGAGGTCCATCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTTAGAGAGGAGAGGTCCATCCTCATAgcagtgataggagagaccatgtgaggatatgaccagtgacttggtctatagagagaagaggagaggtccatcctcatagcagtgataggagagatcatgtgaggatatgacagagctgagtgacttatagagagtagaggagagGTCCATCCTCATAGCAGTGAGTGcctatagagagtagaggagaggtccatcctcatagcagtgagtgcctatagagagaagaggagaggtccatcctcatagcagtgagtgcctatagagagtagaggagaggtccatcctcatagcagtgagtgcctatagagaggaggggcCTAAAACAATGACATCATCTACCGTTtacctcgtaccatctaaacGGCATTGTTGTTAAATCACTGATATGGAAcataaactgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctatctctctc
>XR_005034264.1
gtgaggatatgaccagtgacttggtctatagagagtagaggagaggtccatcctcatagcagtgataggagagatcatgtgaggatatgaccagtgacttggtctatagagagaagaggagaggtccaTCCTCATAGCAGTGATAGGAGAGATCATGTGAGGAAAtgaccagtgacttggtctagagagagaagaggagaggtccaTCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTtagtgtatagagagaagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgagtgcctatagagagaagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgaGTGACTTAGAGAGGAGAGGTCCATCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTTAGAGAGGAGAGGTCCATCCTCATAgcagtgataggagagaccatgtgaggatatgaccagtgacttggtctatagagagaagaggagaggtccATCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTTAGAGAGGAGAGGTCCATCCTCATAGCAGTGAGTGcctatagagagtagaggagaggtccatcctcatagcagtgagtgcctatagagagaagaggagaggtccatcctcatagcagtgagtgcctatagagagtagaggagaggtccatcctcatagcagtgagtgcctatagagaggaggggcCTAAAACAATGACATCATCTACCGTTtacctcgtaccatctaaacGGCATTGTTGTTAAATCACTGATATGGAAcataaactgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctatctctctc
>TU1057551
ccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgagtgacttatagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgaGTGACTTAGAGAGGAGAGGAGAGgagaggtccatcctcatagcagtgataggagagatcatgtgaggatatgacagagctgagtgacttatagagagtagaggagaggtccATCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTTAGAGAGGAGAGGTCCATCCTCATAGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034263.1 False 976 mRNA 0.47 3 81503209 81504564
XR_005034264.1 False 969 mRNA 0.47 3 81503209 81504564
TU1057551 True 321 lncRNA 0.47 4 81503731 81504270

Neighbor

gene id symbol gene type direction distance location
LOC110510686 LOC106597603 coding upstream 116843 81373583 ~ 81386366 (+)
LOC118936811 LOC106593215 coding upstream 255858 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 282812 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 488958 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 567148 80935213 ~ 80936319 (+)
LOC110513527 LOC106595035 coding downstream 21950 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 54180 81558744 ~ 81615329 (+)
LOC118936819 LOC106602658 coding downstream 112896 81617460 ~ 81672338 (+)
LOC118936820 NA coding downstream 177870 81682434 ~ 81685439 (+)
LOC110514629 melk coding downstream 216666 81721230 ~ 81745845 (+)
G928896 NA non-coding upstream 1023 81501668 ~ 81502186 (+)
G928889 NA non-coding upstream 20396 81482607 ~ 81482813 (+)
G928888 NA non-coding upstream 23866 81477952 ~ 81479343 (+)
G928885 NA non-coding upstream 33351 81467730 ~ 81469858 (+)
G928886 NA non-coding upstream 34093 81468473 ~ 81469116 (+)
G928890 NA non-coding downstream 32288 81536852 ~ 81538212 (+)
G928877 NA non-coding downstream 35344 81539908 ~ 81540515 (+)
G928873 NA non-coding downstream 36332 81540896 ~ 81541253 (+)
G928880 NA non-coding downstream 47647 81552211 ~ 81553026 (+)
G928903 NA non-coding downstream 50417 81554981 ~ 81555967 (+)
G928765 NA other upstream 152878 81349536 ~ 81350331 (+)
G928757 NA other upstream 172860 81277039 ~ 81330349 (+)
G928705 LOC106594836 other upstream 189461 81067884 ~ 81313748 (+)
LOC110518956 LOC106595358 other downstream 111 81486596 ~ 81506482 (+)
G928929 NA other downstream 148827 81653391 ~ 81654391 (+)

Expression


Co-expression Network