LOC110513527 (LOC106595035)


Basic Information

Item Value
gene id LOC110513527
gene name LOC106595035
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81526514 ~ 81534991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934189.1
cacacacaaaacaacagcGACACCCGATGGCGAGGAGTGGTACTGCAACTCGTTAACACGGTGCGCTGATAGGAGTGTAGCGCCACCTACAGAgtctgggaggagaggaagaacatCAACCGCCAGCCCCCTCCCTGAGAAGACCCTGCTTTGGGGGGTAAACAAAACCTACATTTAGATGATTTCAAAGTAACTAAATGGAGTCGTAGCTAtttagctgtgttgttgtctgtgtcctttttggagggggggagagaggaaaaacatcaaccatcTAGCTCCAGCCACCGCACCCCCTCCCTGAGAAGACCCTCTTTGGGTTAAAAACTAAATTTAGATTGGTTCAAAGTAACAACATGGAGTCATAGCTATTTAGCTGTGTTGTCTGTGTCCTTTTTTGGAGGGGGTTTTAACCTAGTCGGACAACATATCGACTATGTGACTGTGAGCACCCGGAGAAGCGTTATAGCGGTCCATGAAGAGCCGTCTAGCCGTCGGTAGTCCTCCTTCTGTCCGGTCTAGTGGACTTGATGAACCCCGTCCGTCCACCCTGACCCGTGGAGTAGCACCGACAACACAAACAAGGTCATGGACTTCCCGGGCCACTTCAACCAGGTCTTCCAGCAGCTGAACTACCAGCGCGTCCACAGCCAGCTGTGTGACTGTGTCATTGTGGTGGGCAGCCGCCATTTTAAGGCCCACCGCTCGGTGCTGGCGGCTTGCAGCACTCACTTCAGAGCCCTGTTCACCGTCGCCCAGGGAGACGCCAGCATGAACATGATACAACTGGACAGCGAGGTGGTGACAGCGGAGGCGTTTGCCGCCCTGGTGGACATGATGTACACCTCCACCCTGATGCTAGGAGAGAGCAACGTGATGGACGTGCTGCTAGCTGCCTCTCACCTCCACCTGAACGCCGTAGTCAAGGCCTGTAAGCACTACCTGACCACCCGCACCATGCCCATGTCCCCGCCGGCAGACCCCCGGGCCACACAACACCGCCAACACACCCACGAGGAACAGCAGAGActcaggcagcagcagcaggcagcCGCCAACGCTAACCTAGCCGCTAACGCTAACCAAGAGGCTAACGCTAACCTAGCGGCTAACGCTGCTACGTCCAGGCTCCAGCGGTCGTTCCTGCTGCAGCAGCTGGGTCTAAGCCTGGTGAGCTCTGCCCTGGGCGGGGTGGAGGAGGATGGGCTAAGGGGTGGTAGCGATGGTGTTAgcattagtggtgtagtggagcACAAAGCTTCCTTCCCCATTCGACGCTGCCACAAGAGAAAGCCCTCCCTGAGCTTTAGCCTATCTGAGGACAGGCCCAGGCAGAGGCCCCGCCCCTCCGGAACCCACGGGGATGAAGAAGTGGGACTACTCTCCCCCGACTCCCACAAGACGGGGGAGGAGGCCAGACTGGACGCGGCGATCACCGGCCTAGTAGGGGGCGTGACCCAGGATGACTCCCAGATGCCCAGCCAATCGGACGGCGGACGCTGCGAAGGGGAGGAGCAAGGGATGGCGGAGGAGGGGGGTGTGGGGAAGGAGTCCCTGGATGGGGGGAGTCACCATGGTGATGGGGTGGAGGTGAAGATaacggaggaagaggaggaggaggaggaagtacgGGAGCAACAGGGACAGgtggtggtCAAGTGTGAGCCTCTGAGCTCCCCAGAGCCAGCTGATGACATCACCATCCAGGGTAGCGACCAGCTGGGAcctggaagaggaagaggaggaggggaggagaaggtagAACTGAGCCCACAGAGCAGCAACCGTAGTCTCTCCTCCTCTGACCAACAGCTTCTCCAACCCGGTTCCCAGGTCCTGCTCAAAGGAGGTCTTGGTAGTGGGATTGGCGGTGGTTTTGGCTGTAGTAACCATCTTGATGGCAAGTCTGGTTTTAGGATTTCTAGCTTCCTCGGCGCCAAGGTCTTCGGAAGCGGGGGGTCGGGGGTCGACGCCGGGGACGACGACCTCCTCAACACGACGACCGGCGAGGCGATGGCAGCGACACATGGCTTCCTGCTGAGCCCGGAACACTCTGGAACCAATAACTCCGCCTCGATGCTCCGTCCCGGGTCGGCCAACCACCTGCACCTGCTGGCTGGTGACGGTCTCGGGGGATTCTCTACAGACGCCGATTCGCTCTTCCTGCGTCCCCTGCATGACGGACTGGGAAaccccagaggaggaggagggttcccAGATCCTTTTTCTCTGGATTTCCAGCGCTCCAGCCTGGGTCTGCACTCCCTGGCCCGCGCCTCTCGAGGGAGCTCCCTGGGTTACCCTGGATACCGTCGCATCGCACCTAAAAACGACAACGTGggcggaggaggaggtggaggagaaacGGGGGTCGTTCTCCAAGACGCCCTGTCTTCCTCCAGTCTGGGGGAAGGGGGACCCTTGCTTCTGAACGGTTCGGGAGGTTACGAGTCAGGCCCACCCACCTCGTCCTCGTCCGCCCCACACCCTCGCCCCCAGCTGACCCGTGCCTCTGCCGACGTCCTCTCCAAGTGTAAGAAGGCCCTGTCCGAACACAACGTGCTGGTGGTGGAAGGAGCCAGGAAGTACGCCTGTCGAATCTGCTGTAAGACTTTCCTCACTCTGACCGACTGTAAGAAACACATTAGGGTCCACACCGGGGAGAAACCGTACGCCTGCCTCAAGTGCGGCAAACGCTTCAGCCAGTCGTCTCACCTGTACAAACACTCCAAGACGACGTGTCTGCGTTGGCAGAACAGCAACATGGCCGACGCACTGATGTAGACGATGCTtcggaggggagggggggagggcaGAACAGCAACATGGCC
>XM_036934190.1
cacacacaaaacaacagcGACACCCGATGGCGAGGAGTGGTACTGCAACTCGTTAACACGGTGCGCTGATAGGAGTGTAGCGCCACCTACAGAgtctgggaggagaggaagaacatCAACCGCCAGCCCCCTCCCTGAGAAGACCCTGCTTTGGGGGGGGGTTTTAACCTAGTCGGACAACATATCGACTATGTGACTGTGAGCACCCGGAGAAGCGTTATAGCGGTCCATGAAGAGCCGTCTAGCCGTCGGTAGTCCTCCTTCTGTCCGGTCTAGTGGACTTGATGAACCCCGTCCGTCCACCCTGACCCGTGGAGTAGCACCGACAACACAAACAAGGTCATGGACTTCCCGGGCCACTTCAACCAGGTCTTCCAGCAGCTGAACTACCAGCGCGTCCACAGCCAGCTGTGTGACTGTGTCATTGTGGTGGGCAGCCGCCATTTTAAGGCCCACCGCTCGGTGCTGGCGGCTTGCAGCACTCACTTCAGAGCCCTGTTCACCGTCGCCCAGGGAGACGCCAGCATGAACATGATACAACTGGACAGCGAGGTGGTGACAGCGGAGGCGTTTGCCGCCCTGGTGGACATGATGTACACCTCCACCCTGATGCTAGGAGAGAGCAACGTGATGGACGTGCTGCTAGCTGCCTCTCACCTCCACCTGAACGCCGTAGTCAAGGCCTGTAAGCACTACCTGACCACCCGCACCATGCCCATGTCCCCGCCGGCAGACCCCCGGGCCACACAACACCGCCAACACACCCACGAGGAACAGCAGAGActcaggcagcagcagcaggcagcCGCCAACGCTAACCTAGCCGCTAACGCTAACCAAGAGGCTAACGCTAACCTAGCGGCTAACGCTGCTACGTCCAGGCTCCAGCGGTCGTTCCTGCTGCAGCAGCTGGGTCTAAGCCTGGTGAGCTCTGCCCTGGGCGGGGTGGAGGAGGATGGGCTAAGGGGTGGTAGCGATGGTGTTAgcattagtggtgtagtggagcACAAAGCTTCCTTCCCCATTCGACGCTGCCACAAGAGAAAGCCCTCCCTGAGCTTTAGCCTATCTGAGGACAGGCCCAGGCAGAGGCCCCGCCCCTCCGGAACCCACGGGGATGAAGAAGTGGGACTACTCTCCCCCGACTCCCACAAGACGGGGGAGGAGGCCAGACTGGACGCGGCGATCACCGGCCTAGTAGGGGGCGTGACCCAGGATGACTCCCAGATGCCCAGCCAATCGGACGGCGGACGCTGCGAAGGGGAGGAGCAAGGGATGGCGGAGGAGGGGGGTGTGGGGAAGGAGTCCCTGGATGGGGGGAGTCACCATGGTGATGGGGTGGAGGTGAAGATaacggaggaagaggaggaggaggaggaagtacgGGAGCAACAGGGACAGgtggtggtCAAGTGTGAGCCTCTGAGCTCCCCAGAGCCAGCTGATGACATCACCATCCAGGGTAGCGACCAGCTGGGAcctggaagaggaagaggaggaggggaggagaaggtagAACTGAGCCCACAGAGCAGCAACCGTAGTCTCTCCTCCTCTGACCAACAGCTTCTCCAACCCGGTTCCCAGGTCCTGCTCAAAGGAGGTCTTGGTAGTGGGATTGGCGGTGGTTTTGGCTGTAGTAACCATCTTGATGGCAAGTCTGGTTTTAGGATTTCTAGCTTCCTCGGCGCCAAGGTCTTCGGAAGCGGGGGGTCGGGGGTCGACGCCGGGGACGACGACCTCCTCAACACGACGACCGGCGAGGCGATGGCAGCGACACATGGCTTCCTGCTGAGCCCGGAACACTCTGGAACCAATAACTCCGCCTCGATGCTCCGTCCCGGGTCGGCCAACCACCTGCACCTGCTGGCTGGTGACGGTCTCGGGGGATTCTCTACAGACGCCGATTCGCTCTTCCTGCGTCCCCTGCATGACGGACTGGGAAaccccagaggaggaggagggttcccAGATCCTTTTTCTCTGGATTTCCAGCGCTCCAGCCTGGGTCTGCACTCCCTGGCCCGCGCCTCTCGAGGGAGCTCCCTGGGTTACCCTGGATACCGTCGCATCGCACCTAAAAACGACAACGTGggcggaggaggaggtggaggagaaacGGGGGTCGTTCTCCAAGACGCCCTGTCTTCCTCCAGTCTGGGGGAAGGGGGACCCTTGCTTCTGAACGGTTCGGGAGGTTACGAGTCAGGCCCACCCACCTCGTCCTCGTCCGCCCCACACCCTCGCCCCCAGCTGACCCGTGCCTCTGCCGACGTCCTCTCCAAGTGTAAGAAGGCCCTGTCCGAACACAACGTGCTGGTGGTGGAAGGAGCCAGGAAGTACGCCTGTCGAATCTGCTGTAAGACTTTCCTCACTCTGACCGACTGTAAGAAACACATTAGGGTCCACACCGGGGAGAAACCGTACGCCTGCCTCAAGTGCGGCAAACGCTTCAGCCAGTCGTCTCACCTGTACAAACACTCCAAGACGACGTGTCTGCGTTGGCAGAACAGCAACATGGCCGACGCACTGATGTAGACGATGCTtcggaggggagggggggagggcaGAACAGCAACATGGCC
>TU1057527
tcctttttggagggggggagagaggaaaaacatcaaccatcTAGCTCCAGCCACCGCACCCCCTCCCTGAGAAGACCCTCTTTGGGTTAAAAACTAAATTTAGATTGGTTCAAAGTAACAACATGGAGTCATAGCTATTTAGCTGTGTTGTCTGTGTCCTTTTTTGGAGGGGGTTTTAACCTAGTCGGACAACATATCGACTATGTGACTGTGAGCACCCGGAGAAGCGTTATAGCGGTCCATGAAGAGCCGTCTAGCCGTCGGTAGTCCTCCTTCTGTCCGGTCTAGTGGACTTGATGAACCCCGTCCGTCCACCCTGACCCGTGGAGTAGCACCGACAACACAAACAAGGTCATGGACTTCCCGGGCCACTTCAACCAGGTCTTCCAGCAGCTGAACTACCAGCGCGTCCACAGCCAGCTGTGTGACTGTGTCATTGTGGTGGGCAGCCGCCATTTTAAGGCCCACCGCTCGGTGCTGGCGGCTTGCAGCACTCACTTCAGAGCCCTGTTCACCGTCGCCCAGGGAGACGCCAGCATGAACATGATACAACTGGACAGCGAGGTGGTGACAGCGGAGGCGTTTGCCGCCCTGGTGGACATGATGTACACCTCCACCCTGATGCTAGGAGAGAGCAACGTGATGGACGTGCTGCTAGCTGCCTCTCACCTCCACCTGAACGCCGTAGTCAAGGCCTGTAAGCACTACCTGACCACCCGCACCATGCCCATGTCCCCG

Function

NR:

description
zinc finger and BTB domain-containing protein 5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934189.1 False 2831 mRNA 0.59 5 81526514 81534991
XM_036934190.1 False 2585 mRNA 0.61 6 81526514 81534991
TU1057527 True 738 TUCP 0.56 4 81526748 81529882

Neighbor

gene id symbol gene type direction distance location
LOC110518956 LOC106595358 coding upstream 20361 81486596 ~ 81506482 (+)
LOC118936817 NA coding upstream 21950 81503209 ~ 81504564 (+)
LOC110510686 LOC106597603 coding upstream 140148 81373583 ~ 81386366 (+)
LOC118936811 LOC106593215 coding upstream 279163 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 306117 81217975 ~ 81220397 (+)
LOC118936818 LOC106576580 coding downstream 23753 81558744 ~ 81615329 (+)
LOC118936819 LOC106602658 coding downstream 82469 81617460 ~ 81672338 (+)
LOC118936820 NA coding downstream 147443 81682434 ~ 81685439 (+)
LOC110514629 melk coding downstream 186239 81721230 ~ 81745845 (+)
LOC110515659 NA coding downstream 215231 81750222 ~ 81754997 (+)
G928896 NA non-coding upstream 24328 81501668 ~ 81502186 (+)
G928889 NA non-coding upstream 43701 81482607 ~ 81482813 (+)
G928888 NA non-coding upstream 47171 81477952 ~ 81479343 (+)
G928885 NA non-coding upstream 56656 81467730 ~ 81469858 (+)
G928890 NA non-coding downstream 1861 81536852 ~ 81538212 (+)
G928877 NA non-coding downstream 4917 81539908 ~ 81540515 (+)
G928873 NA non-coding downstream 5905 81540896 ~ 81541253 (+)
G928880 NA non-coding downstream 17220 81552211 ~ 81553026 (+)
G928903 NA non-coding downstream 19990 81554981 ~ 81555967 (+)
G928765 NA other upstream 176183 81349536 ~ 81350331 (+)
G928757 NA other upstream 196165 81277039 ~ 81330349 (+)
G928705 LOC106594836 other upstream 212766 81067884 ~ 81313748 (+)
G928929 NA other downstream 118400 81653391 ~ 81654391 (+)
G929033 NA other downstream 413119 81948110 ~ 81961513 (+)

Expression


Co-expression Network