LOC118936694 (tbc1d1)


Basic Information

Item Value
gene id LOC118936694
gene name tbc1d1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81997421 ~ 82120937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989408.1
ccctccccctcgtcacccaccccccccacccccctcacccCCAACACCATTCCtcacccagccctcagcccctccccctcggcatcctccctcctcacccccaaCACCCATCCTCACCCAGCCCTCACCCCCTCCCGCCTTAACCTCACCCCTAACAGATCGTCCTACACAACCCTCACCCCTacaccctcccccctccacctcacCCCTCTCGGAAGAaacacagaggaagaggaggaagaggttcAATACAGACTGACTCTGGTTGGCTGCCTCCCGGTCCATCACCTGACCACCATGGCCATGCTGCCCTGGGTCGTGGCTGAGATCGGGAGGCCTCGGCCTGGGGAGAGAGACAAGCCCGTAGTGGGTCGGCCGCCCGGAAGTCCTGCAAGTAGAGGCACACACACCGGAAACGGAGAGAGCGTTTCCTCACGACGACACCaggcggtgtgtctgtgtgtgtccgccTCGTGGGTGCGGTGTGTGTGgacggaggaggaggtggagagggacaggCGACCGTGGGACCCCCTCACACACACGGTGTTGTTTGAGTGCCGGCCGCACCGCGTCACCAAGCTACTCCACAACAGCAGGGAGCCGTGTAGCTTTGGTTGTCTGGTTCGAGACACACATCTCTGTTACTGCTACGTCTTCCAATGCCAGGACTGCACCAAggtccCTGAGATCATCAGTACGCTGCGTCAGGCCGGGAAGAGCTCGGCGCGCAACGATGACCTCGCGGCGCCCAAACCCGCCGCCTCTTCCTCAGAAGACTGTACTCCGTCCGCGTCGTCGGCCTTCGGCGCTGCCACCATGTTCGCCAAGAGGTTTGAGGTTCTGTTCTGTGGAAGAGTGACCGTCGCTCACAAGAAAGCCCCGCCCGCCTTGATTGACGAGTGCATCGAGAAATTCAGCCAATCCGTAGGGGCCGGGGGCGATCCTAAACCAGAAAGTGGCGGTGGATTGGTGGACGGGCTGCGGAGAGCTCTGGCCTTGCCGACGCTAACGCGAGATGGAGGAACTGGGGATGGAGAGGTCAGGGGAGGAGGATACGGTGCCTCTAGTGGTGGGAGGCCGGTGGTGTTCCAACCAGACCCCAGTTTCCCCTGCCTCCGGGCCCTGGATGAGAACGGCCTGTCAcctgaactacacacacacaccgctgggGTCCAGCCCACCAGTCTACAGGAGAACAGGACCATGCTGTTCAtgGTGGGTCGGTCTCAGATCTTCCTGGTCAGTCCAGACACTAAGAAGGTTGCCATAGAGAAGAGCTTCAGAGAAATATCTTTCTGCTCACAGggtatTCATCATGTGGATCACTTTGGGTTCATCTGTAGAGAGACAGTAGAAGGAGGGAGCTGTACATTCGTCTGCTATGTCTTCCAGTGTACTGATGAATCCCTGGTGGATGAGATCATGTTGACTTTAAAGCAGGCGTTCTCTGTGGCCGCCCTGCAGCAGAGTGTAAGGACCAGGAGCCAGCAGTGTGACAGTTGCCCCATGCAGCAGCTGCACAGGCTGTGTGAGAGGATAGAAGGTCTCCTCCCGTCTAAAGCCAAGCTCGAGTTTCAGAAACATCTGGCCACACTGGACAACCAGGAACAAGCTGCTGTGTTCGAGCACACTGTgagggccAGTCCTAAGAGTGACCAGGAGGAGAACGAGCTGGTGATGGGGTCTTTGAGGAGTCTGTATGAACAGAAACAGAGGAGTCATCAACACACAGATCACAGACCGgtACCAGAGGCTCCAGCCCCAGTAGAGGTCCAGTCCAGTAGCAGACAGAGATTAGAGCAGTTTAAAACCAGAGCAAAACGCTCCCTCACAGAGTCACTGGAGGGCATCTGGAAGGGAAGTAGCAAAACCAGGgctcagagagagaacagtgaaggAGACATCAGTTCATCTGACTCTACACTgaactctactagacaggacCCCTCCCTAGAagaccccctcccctcctccaatCCTCTGCGGTCTCACAACTCTACAGGGGACCTGAAACGTCtggacacctctcctctctccgtctctccttccttctcatccctgtctctgtcctcccggGACGCACGGTCCCAGCCGCATGGCTTCAGGCGGAGAGCCAGCACCTTCAGCCACTCCCCTTCCTACCACGATCACGCCCCTTCCTACCCTGACCACACCCCctcgtatacacacacaccccaggtaCCCAGCGGCTCCACCAAGCCCAAACTGGTCCGGCACTACTCTGTCAGCACCGACACTCCGCACCAGAGCAAACGACTCCAGGCGGACCCTactcttcctttcctctccttcccctctcctcttctctctcatcgaccctcatccccctctctcggGGGTCGCCTGGCCAAACGAAGTCCTCTGGGAGGTCTGCGCGCTCgtctccgctcctcctcctctgttcccaaCTTCCTCAAACTCCTCGCTCCTGTCCACGAGAGCCACCCCTGTGACTTAGACAAGAGGAGtgacgTAGCAGCCCTGTCCAGTCcggtagcagtgtgtgtggtagGAGACAGTCCTCTACGGAGACACTCCTGGAGACAACAGATCTTCCTTCGTGTCGCTACCCCTCAGAAAAACACTGACAGCAatgaCAGGGGTGACTGCTCCCTAGATGGCAGGGGCGTGTCTGTGTGCGGGGTTGGAGACGGATCACTGGGCGTGGTTCCGGAAGAGAGGAAGAAACGTGGCCGAGCAGAACTGAGACGGCTGTGGAGGAAGGCCATCCTGCAACAGACACTACTgctgaggatggagagagagaacaacaagatacaggCGTCGGAGAGCAAACGCCAGCGTCTGGACTATGAGGAGATAACTCCCTGTCTGAAGGACGTCACGCTGGTCTGGGAGAGCATGCTGGGAACTCAGGCCAGGTCGAAGGTCAAGTTCAACACCGACACGGTCCACTCTGCTGTCGAACAGggagTTCCTAGACAGTACAGAGGAGAGGTGTGGAAGTTCCTGTCAGAGCAGTTTGTATTGAGACAACCGGTTCCTGTCAGATCTCCATCTGACAACAGGCCTTATAAAGAACTGCTGAAACAACTGACCTCCcaacagcacgccatcctcatagacctgggtcGTACCTTTCCGACCCATCCTTATTTCCAGGCTCAGTTGGGGTCTGGTCAGCTGTCTCTCTATAACCTCCTGAAGGCCTACTCTCTACTGGACCCAGAGgtGGGATACTGTCAGGGTCTCAGCTTCGTAGCAGGAGTGTTGTTGTTGCACATGGGAGAGGAGGACGCCTTCAACATGCTCCAGTTCCTCATGTATCATATGGGGCTTCGCAAGCAGTACAGACCTGACATGATAATACTACAGATTCAGATGTACCAGCTGTCTCGTCTCCTCCATGACTACCACAGAGACCTGTACGTCCATCTGGAACAGCATGAGATAGGACCGTCTCTCTACGCTGCTCCCTGGTTCCTCACGGCCTTCGCCTCGCACTTCCCTCTGGGCTTCGTAGCCAGGGTGTTTGacatGCTGTTTCTCCAGGGTTCGGAGGTGATCTTCAAGGTGTCGCTAAGTCTTCTGGGTAGTCACAAGCCCTTGATCCTACAGCACGACAGTCTGGAGTCTATAGTGGACTTCATCAAGACTACACTACCTAACCTGGGACTGGTCCAGATGGAGAAGACCATCAACCAGgTGTGTGAGATGGACCTGTCCAATCAGCTGCAGGCGTACGAGGTGGAGTACCACGTCTTACAGGACGAGCTGTGTGACACGCCCGCTCACCTCAACCAATCGCAGCGCACCGCCCAGCTGGAACGCACTAATCAGAGCCTCCGACAGCAAAACCTCGACCTGCTGGAGGAACtgcagGTGTCCCAGGCTCGTGTGTGTCGTCTGGAAGGCCAGGTGGAGGGGCTGGCCCAATCGGAGGCTCTGCTGAGAGAACGGGTGTTcgacctggaggaggagaggaacggacTGCGGAGCGCCgtcacacacctgcacacactcCTCACCGCActgggaatacacacacacacaacgcacgGGGACTTCAACCTGgaccctcacacacactccactgCCGACACAGATGAACACTGA
>TU1057769
CCTAGAagaccccctcccctcctccaatCCTCTGCGGTCTCACAACTCTACAGGGGACCTGAAACGTCtggacacctctcctctctccgtctctccttccttctcatccctgtctctgtcctcccggGACGCACGGTCCCAGCCGCATGGCTTCAGGCGGAGAGCCAGCACCTTCAGCCACTCCCCTTCCTACCACGATCACGCCCCTTCCTACCCTGACCACACCCCctcgtatacacacacaccccaggtaCCCAGCGGCTCCACCAAGCCCAAACTGGTCCGGCACTACTCTGTCAGCACCGACACTCCGCACCAGAGCAAtgacgTAGCAGCCCTGTCCAGTCcggtagcagtgtgtgtggtagGAGACAGTCCTCTACGGAGACACTCCTGGAGACAACAGATCTTCCTTCGTGTCGCTACCCCTCAGAAAAACACTGACAGCAatgaCAGGGGTGACTGCTCCCTAGATGGCAGGGGCGTGTCTGTGTGCGGGGTTGGAGACGGATCACTGGGCGTGGTTCCGGAAGAGAGGAAGAAACGTGGCCGAGCAGAACTGAGACGGCTGTGGAGGAAGGCCATCCTGCAACAGACACTACTgctgaggatggagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagaacaacaagatacaggataacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagataCAGGGTAACATAATGGAGAGAACAACAAGATACAgggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagataCAGGGTAACATAATGGAGAGAACAACAAGATACAgggtaacagaatggagagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagaacaagatacagggaacagaatggagagagagagaacagctggtTGAGGTTATTTGAGGATATAGACAGAGCGTCATGAACCCAATCAACCCTGCTcaatcacacacacccacacccaggTGAAACTGGCATGTCTAGGGCAACCATAAAGGGATCGTTAATTGTCCTCTAGGAATTCAACAACATGAAATACTTAGAATTAGATGTTGTcatcgggtgtgtgtgtgtgtggtcttaccTGGTGAAGGTACAGTTCAGGTGAGGTTGAGCCGTGTGTTGCCAGGGGTTACGCCCAACCTCACGGCGGTTTGGGAACCGAAACGTCGCTGCGTTGAATCCCGACGAGGTGAAACAAATCTGTCTCTGTACAAG

Function

symbol description
tbc1d1 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D1 (TBC1 domain family member 1).

NR:

description
TBC1 domain family member 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989408.1 False 4101 mRNA 0.58 23 81997421 82120937
TU1057769 True 2697 lncRNA 0.46 3 82059611 82082138

Neighbor

gene id symbol gene type direction distance location
LOC118936823 pgm2 coding upstream 10987 81980794 ~ 81986434 (+)
LOC118936939 NA coding upstream 32596 81964084 ~ 81965938 (+)
LOC118936822 NA coding upstream 55134 81929145 ~ 81942287 (+)
LOC110515659 NA coding upstream 242424 81750222 ~ 81754997 (+)
LOC110514629 melk coding upstream 251576 81721230 ~ 81745845 (+)
LOC118936825 LOC106593007 coding downstream 52394 82173331 ~ 82211022 (+)
LOC110510824 LOC106594418 coding downstream 91511 82212448 ~ 82232976 (+)
LOC118936827 LOC106591767 coding downstream 140351 82261288 ~ 82306725 (+)
LOC118936828 wdr19 coding downstream 195784 82316721 ~ 82401240 (+)
LOC110512972 lias coding downstream 606478 82727415 ~ 82738670 (+)
G929063 NA non-coding upstream 601 81996603 ~ 81996820 (+)
G929062 NA non-coding upstream 2790 81993827 ~ 81994631 (+)
G929053 NA non-coding upstream 5913 81990867 ~ 81991508 (+)
G929049 NA non-coding upstream 26869 81970272 ~ 81970552 (+)
G929046 NA non-coding upstream 28018 81969170 ~ 81969403 (+)
G929057 NA non-coding downstream 5156 82126093 ~ 82126901 (+)
G929101 NA non-coding downstream 8575 82129512 ~ 82129797 (+)
G929102 NA non-coding downstream 10073 82131010 ~ 82131240 (+)
G929103 NA non-coding downstream 10384 82131321 ~ 82131658 (+)
G929104 NA non-coding downstream 11611 82132548 ~ 82132806 (+)
G929033 NA other upstream 35908 81948110 ~ 81961513 (+)
LOC118936819 LOC106602658 other upstream 340913 81617460 ~ 81672338 (+)
G928929 NA other upstream 343030 81653391 ~ 81654391 (+)
LOC118936818 LOC106576580 other upstream 401669 81558744 ~ 81615329 (+)
G929113 NA other downstream 58849 82179786 ~ 82180426 (+)
G929159 NA other downstream 187866 82308803 ~ 82309572 (+)
G929087 NA non-coding upstream 8336 82050526 ~ 82051275 (+)
G929086 NA non-coding upstream 15665 82043670 ~ 82043946 (+)
G929084 NA non-coding upstream 18154 82040588 ~ 82041457 (+)
G929073 NA non-coding upstream 45204 82013403 ~ 82014407 (+)
G929068 NA non-coding upstream 51852 82007264 ~ 82007759 (+)
G929095 NA non-coding downstream 14188 82096326 ~ 82098832 (+)
G929096 NA non-coding downstream 19562 82101700 ~ 82103252 (+)
G929099 NA non-coding downstream 35995 82118133 ~ 82118947 (+)

Expression


Co-expression Network