LOC118936940


Basic Information

Item Value
gene id LOC118936940
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82538918 ~ 82540157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034366.1
caccaccactcctgcagcagctgtcaccaccaccgctcctgcagcagctgtcaccaccaccactaccacccctgcagcagctgtcaccaccaccaccgccgcCCCTGCAGCAGGTGGCACCACCATCAGTGCTGGGTCATCAACCACATCAGGAAGTGCTCCCCGACCCACTTCCTTCTCTCTGGCTGCCTTGCCTCTCAGTTTGGCTCTGTTAATGGTTCAGCTGCTGGCTAGCTAATAGCCTGGGACATAGCGCTGTGGCTCTGCTAGCTACTAGGCTAGCTAATAGCCTGGGGCATAGCTGCTGTGGCTCTGATAGCTGCTGGCTAACCAATAGCCTGGGGCATAGCAGCTGTGGCATTGGTTTAACCAATCAACAGTTTCCCAGCTCTCATAGATACAgccttaaagctagaatccttagttgctacacaCATTTTTTTACTTATAAATTAATTATATCTACCCATTGATTCTAGAAGAATATAACATATGAATACCTCATGAgtctgtcgtaccccatcagaacccaaaatataagcttgttttaccccAATGTTTCTAAACAATGCAAAcaaacactgtacagctttaaaacatgattaaaactataattctga

Function

NR:

description
PREDICTED: cell wall protein DAN4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034366.1 True 620 mRNA 0.48 2 82538918 82540157
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936826 NA coding downstream 278182 82233071 ~ 82260736 (-)
trnap-agg-151 NA coding downstream 327040 82211807 ~ 82211878 (-)
LOC118936824 NA coding downstream 464190 82074452 ~ 82074728 (-)
pax-5 pax-5 coding downstream 604708 81801697 ~ 81934210 (-)
LOC110511793 NA coding downstream 737261 81800264 ~ 81801657 (-)
LOC110515655 rfc1 coding upstream 87413 82627113 ~ 82698838 (-)
rpl9 rpl9 coding upstream 179363 82719520 ~ 82727225 (-)
LOC118936829 ugdh coding upstream 201934 82742091 ~ 82773400 (-)
LOC118936831 smim14 coding upstream 238393 82777425 ~ 82792240 (-)
LOC118936834 pds5a coding upstream 275190 82814525 ~ 82905732 (-)
G930058 NA non-coding downstream 25994 82451501 ~ 82512924 (-)
G930070 NA non-coding downstream 45134 82491542 ~ 82493784 (-)
G930040 NA non-coding downstream 53871 82484268 ~ 82485047 (-)
G930035 NA non-coding downstream 54054 82412957 ~ 82484864 (-)
G930066 NA non-coding downstream 62266 82474717 ~ 82476652 (-)
G930099 NA non-coding upstream 69581 82609738 ~ 82617007 (-)
G930098 NA non-coding upstream 73984 82614141 ~ 82621946 (-)
G930105 NA non-coding upstream 86533 82626690 ~ 82626973 (-)
G930106 NA non-coding upstream 88133 82628290 ~ 82628624 (-)
G929952 NA other downstream 341926 82190993 ~ 82196992 (-)
G929912 NA other downstream 417934 82120468 ~ 82120984 (-)
G929926 NA other downstream 420342 82118017 ~ 82118576 (-)
G929889 NA other downstream 429169 82108424 ~ 82109749 (-)
G930096 NA other upstream 160080 82700237 ~ 82716562 (-)
G930187 NA other upstream 498004 83038161 ~ 83038482 (-)

Expression

LOC118936940 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
End of interactive chart.

LOC118936940 Expression in each Bioproject

Bar chart with 4 bars.
LOC118936940 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.

Co-expression Network