Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110515655 |
| gene name | rfc1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 82627113 ~ 82698838 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rfc1 | Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036934227.1 | False | 3420 | mRNA | 0.55 | 19 | 82627570 | 82698838 |
| TU1059310 | False | 1014 | lncRNA | 0.48 | 2 | 82627113 | 82632779 |
| TU1059312 | True | 459 | lncRNA | 0.55 | 2 | 82627668 | 82632779 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118936940 | NA | coding | downstream | 87413 | 82538918 ~ 82540157 (-) |
| LOC118936826 | NA | coding | downstream | 366834 | 82233071 ~ 82260736 (-) |
| trnap-agg-151 | NA | coding | downstream | 415692 | 82211807 ~ 82211878 (-) |
| LOC118936824 | NA | coding | downstream | 552842 | 82074452 ~ 82074728 (-) |
| pax-5 | pax-5 | coding | downstream | 693360 | 81801697 ~ 81934210 (-) |
| rpl9 | rpl9 | coding | upstream | 20682 | 82719520 ~ 82727225 (-) |
| LOC118936829 | ugdh | coding | upstream | 43253 | 82742091 ~ 82773400 (-) |
| LOC118936831 | smim14 | coding | upstream | 79712 | 82777425 ~ 82792240 (-) |
| LOC118936834 | pds5a | coding | upstream | 116509 | 82814525 ~ 82905732 (-) |
| slit2 | LOC102781928 | coding | upstream | 446888 | 83143651 ~ 83400274 (-) |
| G930105 | NA | non-coding | downstream | 597 | 82626690 ~ 82626973 (-) |
| G930098 | NA | non-coding | downstream | 5624 | 82614141 ~ 82621946 (-) |
| G930099 | NA | non-coding | downstream | 10563 | 82609738 ~ 82617007 (-) |
| G930079 | NA | non-coding | downstream | 27486 | 82521862 ~ 82600084 (-) |
| G930058 | NA | non-coding | downstream | 114646 | 82451501 ~ 82512924 (-) |
| G930110 | NA | non-coding | upstream | 4148 | 82702986 ~ 82704167 (-) |
| G930117 | NA | non-coding | upstream | 18186 | 82717024 ~ 82717248 (-) |
| G930115 | NA | non-coding | upstream | 24553 | 82723391 ~ 82724021 (-) |
| G930122 | NA | non-coding | upstream | 37290 | 82736128 ~ 82736402 (-) |
| G930118 | NA | non-coding | upstream | 39524 | 82738362 ~ 82739791 (-) |
| G929952 | NA | other | downstream | 430578 | 82190993 ~ 82196992 (-) |
| G929912 | NA | other | downstream | 506586 | 82120468 ~ 82120984 (-) |
| G929926 | NA | other | downstream | 508994 | 82118017 ~ 82118576 (-) |
| G929889 | NA | other | downstream | 517821 | 82108424 ~ 82109749 (-) |
| G930096 | NA | other | upstream | 1399 | 82700237 ~ 82716562 (-) |
| G930187 | NA | other | upstream | 339323 | 83038161 ~ 83038482 (-) |
| G930070 | NA | non-coding | downstream | 133329 | 82491542 ~ 82493784 (-) |
| G930107 | NA | non-coding | upstream | 48201 | 82680980 ~ 82681340 (-) |
| G930108 | NA | non-coding | upstream | 55561 | 82688340 ~ 82688610 (-) |
| G930109 | NA | non-coding | upstream | 57886 | 82690665 ~ 82690962 (-) |
