LOC110512972 (lias)


Basic Information

Item Value
gene id LOC110512972
gene name lias
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82727415 ~ 82738670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934228.1
AGCGGAcgaaattatttattattttctaaGTTTTATTTTAATACCAGGCGTAAGTACTCGATCCCAGAGAAATGTTTTGTCAATGACAGACGCTAGCAAATGTTAGTTAAAGTCATGGCTTTGGTCAAACAAAGTTATTTTATCGCGGGTCGTTTCTCCAGCAACCACCGGTGGTTGAATCCCAAATGCAACCAACATGTGTACGCCGTCAGCGGACTGACCACAGCGGCCAGGTCATCCCAGACACAGAAGGACCGCAAGAAGGAGCTGTCCGATGACGGGCCCGGCCTCCAGGACTTTATATCCGGGGAGCTGTCTGAGAAGAACAACTGGGAGGAGTACAGGGGTAACCTgaagagacagaagggagagagGCTGAGACTTCCCCCGTGGCTGAAGACTGAGATTCCTATTGGCAAGAACTAcaacaagctgaagaacaccctGAGAGACCTCAACCTGCACACGGTGTGTGAGGAGGCCAGGTGTCCTAACAttggggagtgttggggaggAGGGGAACATGGTACGGCCACAGCTACCATCATGttgatGGGGGACACATGTACCCGTGGCTGTAGGTTCTGTTCTGTGAAGACCGCTCGTCAGCCCTCTCCCCTGGACCCAGATGAGCCCTATAACACAGCCAAGGCCATCGCTGCCTGGGGACTGGACTATGTGGTTCTGACCTCTGTGGACAGAGACGATATCGCTGACGGAGGGGCGGAGCATTTTGCCAAGACCGTCTCCAACCTGAAGGAGAGGAACTCCCAGATCATGGTGGAATGTCTGACCCCTGATTTCCGAGGAGATCTGGCGGCGGTGGAGAAGATCGCCCAATCAGGGCTGGACGTTTACGCCCACAATGTGGAGACCGTCCGCGAGCTGCAGAGACACGTCCGTGATCCGCGGGCGAACATCGACCAATCCCTGAATGTCCTGCGTCACGCCAAGGCCGTCAGACCAGACATTCTCACCAAGACCTCCATCATGTTGGGTCTCGGAGAGACGGACcggcagatctataacacactgactgagcTGAGAGAGGCAGGAGTGGATTGTCTAACACTGGGACAGTACATGCAGCCCACCAAACGCCACCTCAAGgtggaggAGTATGTAACTCCTGAGAGGTTTGGCCACtgggaggaggtggggaaggagaTGGGATTCGTCTACACAGCCAGCGGACCCTTAGTGCGCTCCTCATACAAAGCAGGTGAGTTCTTCCTGAAGAATCTGTTAGAGAAGAGGAAGGCAGCGGCAGAATAGCctgatcacctggactcaccttTACCTGAGTCCTGACGTCTCCTCCTTTCagattcctctctccctccataaaGCTACTCTAGATAACACTGTATTACAATATAATATACCACAACAGCTACAATATAAAGTTCTCCAATCCAGAATATGAGCTACTACAGGACTCTGTTCATGTTGATGTCTCGTTCTGTACATTATAACCAGTGATGTAGTGGGGGGTAAATATCTGGGAAGATAAAGGGGGGTAATTACCTGGGAATATAAA

Function

symbol description
lias Predicted to enable lipoate synthase activity. Predicted to be involved in lipoate biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human LIAS (lipoic acid synthetase).

NR:

description
PREDICTED: lipoyl synthase, mitochondrial

GO: NA

KEGG:

id description
K03644 lipA, LIAS, LIP1, LIP5; lipoyl synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934228.1 True 1540 mRNA 0.52 11 82727415 82738670

Neighbor

gene id symbol gene type direction distance location
LOC118936828 wdr19 coding upstream 326175 82316721 ~ 82401240 (+)
LOC118936827 LOC106591767 coding upstream 420690 82261288 ~ 82306725 (+)
LOC110510824 LOC106594418 coding upstream 494439 82212448 ~ 82232976 (+)
LOC118936825 LOC106593007 coding upstream 518081 82173331 ~ 82211022 (+)
LOC118936694 tbc1d1 coding upstream 606478 81997421 ~ 82120937 (+)
LOC118936830 NA coding downstream 2468 82740970 ~ 82780517 (+)
LOC118936832 LOC105009164 coding downstream 54983 82793509 ~ 82811450 (+)
LOC118936833 NA coding downstream 61249 82799919 ~ 82803172 (+)
LOC110512617 n4bp2 coding downstream 167060 82905730 ~ 82956331 (+)
LOC110515053 rhoh coding downstream 222401 82961071 ~ 82976330 (+)
G929294 NA non-coding upstream 9110 82717808 ~ 82718305 (+)
G929284 rfc1 non-coding upstream 11586 82698511 ~ 82715829 (+)
G929287 NA non-coding upstream 20024 82704948 ~ 82707391 (+)
G929282 rfc1 non-coding upstream 29403 82697633 ~ 82698012 (+)
G929278 NA non-coding upstream 37437 82689742 ~ 82689978 (+)
G929258 NA non-coding downstream 68 82738738 ~ 82739793 (+)
G929302 NA non-coding downstream 10218 82748888 ~ 82749196 (+)
G929304 NA non-coding downstream 21821 82760491 ~ 82761057 (+)
G929306 NA non-coding downstream 26087 82764757 ~ 82765033 (+)
G929159 NA other upstream 417843 82308803 ~ 82309572 (+)
G929305 NA other downstream 22935 82761605 ~ 82762488 (+)
G929370 NA other downstream 296442 83035112 ~ 83035491 (+)

Expression


Co-expression Network