LOC118936273 (nachra9)


Basic Information

Item Value
gene id LOC118936273
gene name nachra9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82990848 ~ 83014394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934592.1
ATGAAGACGGTGGTGCTACTGGCGTGGATCAGCTGCTGGATCGATGtaTGTACCAGTGCCCAGGGTCGTTATGCCCAGAAGCTGCTTAACGACCTGATGGAAAATTACTCCAGTGCCCTGAGACCAGTAGAGGACACGGACAAGACCCTGAATGTCACACTACAGATCACCCTGTCTCAGATCAAAGATATGgacgAGAGGAACCAGGTGTTGACTACCTACCTGTGGATCCGTCAGACGTGGTTCGATGCGTACCTGAAGTGGGATAAAGAGGAATACGATGGACTGGAGGTTATCCGCATCCCCAGTAACCTGGTCTGGAGACCTGACATAGTGCTCTATAACAAggcTGATGAGGAAGCATCTGGTCCAGCAGACACCAACGTGGTGTTACGTTACAATGGAGAGATAACCTGGGACATGCCGGCCATCACCAAGAGCTCCTGTGTTGTGGACGTCTCCTACTTTCCCTTCGACTGGCAGTGGTGTAACCTCACGTTTGGGTCCTGGACATACAACGGcaaccagGTGGACATTGCCATGGGGATGGACAGTGGGGACCTGTCGGACTTTGTGGAGAACGTGGAGTGGGAGTGTCACGGAATGCCGGCGGTCAGGAACGTCATCATGTACGGCTGCTGCTCAGACCCGTATCCTGACATCACCTACACCCTCCACCTGAAGAGACGGTCTCTCTTCTACATCTTCAACCTGCTGCTGCCCTGCttcctcatctccttcctagCCCCCCTGGGTTTCTACCTGCCCGCTGACTCAGGAGAGAAGGTTTCTCTGGGCGTGACAGTTCTACTGGCCCTCACTGTCTTCCAACTAATGGTGGCAGAGAGCATGCCTCCCTCTgagagtgttccctatataggAAAGTACTACATAGCGACGATGACGATGATCACGGCCTCGACATCTCTGACCATCTTCATCATGAACATCCATTTCTGTGGTGCAGAGGCCAAGCCTGTTCCTCACTGGGCCAAGgtaCTCATCATTGACTACATGTCTAAGATCCTGTTTGTGTACGAGGTGGGGGAGAACTGCACTACACCAGAGAGTGAGAGGACACCTCTCTACAGTGAGGAACCAATGTCGGGCAACTCCGCCCTGGCACGGAACCATTACCACGACGACCTCTACCATGACGGCGGCTGTTACCAAGACGACTGCCATCGCCTCGGTCCGTACCAGTACGGCAATGGGCACCTCCAAAACCACCACAGCACCCATCAAAATCACCTCGACAACTGTCGCTACGCTAACGGCGGTCACCGTGACGATCATTACAGTAACCGTAGTAACCAGAACCATCACAGCAACCCGAGCCAGACCTCCAAGGGGGAAGGGGGCGAGGAGAAGAGGGAGCCCCTGAGACATTACCACCACAtcgggagagaggagctggactATCAGGCACCCCCTCCAGGGAACCTCCAGAATGGTGGGCTGAATGAGCCGCTGCCTTACCCCAAGGAGAAGCACCTCAACCCAGCCTCGGCCCCAGCCTGCTCCTGCCCCTGCCCACACCACAAACAGgtGGTGTATAACATTCAGTACATCGCCAACTGTTTCCGGGAGCAACGGGCTACGTGTGCTAAAGGGGCGGAGTGGAAGAAGGTTGCCAAGGTGATGGACCGGTTCTTCATGTGGATCTTCTTCATCATGGTCTTCCTCATGAGTATCCTCATCATCGGCAAGGCAActtga

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-9-I precursor

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04810 CHRNA9; nicotinic acetylcholine receptor alpha-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934592.1 True 1719 mRNA 0.55 9 82990848 83014394

Neighbor

gene id symbol gene type direction distance location
LOC110515053 rhoh coding upstream 14518 82961071 ~ 82976330 (+)
LOC110512617 n4bp2 coding upstream 35035 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 coding upstream 179398 82793509 ~ 82811450 (+)
LOC118936833 NA coding upstream 187676 82799919 ~ 82803172 (+)
LOC118936830 NA coding upstream 248256 82740970 ~ 82780517 (+)
LOC118966663 NA coding downstream 7782 83022176 ~ 83102695 (+)
LOC110515357 LOC100196562 coding downstream 101062 83115455 ~ 83131029 (+)
LOC118936836 NA coding downstream 127103 83139955 ~ 83143528 (+)
LOC118936837 LOC106592595 coding downstream 534894 83540003 ~ 83557399 (+)
LOC110512943 LOC106602128 coding downstream 545696 83560090 ~ 83562987 (+)
G929355 NA non-coding upstream 4937 82984811 ~ 82985911 (+)
G929353 NA non-coding upstream 10395 82979572 ~ 82980453 (+)
G929346 NA non-coding upstream 38138 82952090 ~ 82952710 (+)
G929341 NA non-coding upstream 103132 82884740 ~ 82887716 (+)
G929328 NA non-coding upstream 133623 82856207 ~ 82857225 (+)
G929368 NA non-coding downstream 17148 83031542 ~ 83031777 (+)
G929371 NA non-coding downstream 23264 83037658 ~ 83037904 (+)
G929378 NA non-coding downstream 43130 83057524 ~ 83077219 (+)
G929387 NA non-coding downstream 80025 83094419 ~ 83183076 (+)
G929305 NA other upstream 228360 82761605 ~ 82762488 (+)
G929159 NA other upstream 681276 82308803 ~ 82309572 (+)
G929370 NA other downstream 20718 83035112 ~ 83035491 (+)
LOC110512947 NA other downstream 572194 83586588 ~ 83639961 (+)
LOC110518749 LOC106592297 other downstream 879200 83893530 ~ 83968790 (+)
LOC110516172 htt other downstream 980279 83981478 ~ 84112196 (+)
LOC110515513 LOC106594142 other downstream 1122179 84130437 ~ 84282587 (+)

Expression


Co-expression Network