LOC110515357 (LOC100196562)


Basic Information

Item Value
gene id LOC110515357
gene name LOC100196562
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83115455 ~ 83131029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934271.1
CGCACTCCGCTCCCCTAGATGGCGCTGTACATGACTTCCCAATGGCAGAAGTCCTAATGTGTTGTCGTTAGCTACACCGCTGTGTGCTTGTCTGCTGTCGAACGGAGAGGAGGAAAAAATATGACAGGGAAACGAAAAACTAAATCTACTCCTCAGGAGTCAGATTCTGCCGAGGGGCAGTTGAAAAAGAAATCCCGGTCGGAGGAGCCGACAGCGAGACCGACTACTGCTGAGGTACCGGCCAGactgagggaggaggtggagagactCTATAAACTGAGGATGCCTGAAGACTTCTACCTCTTCTGGGACTTCTGCTCCCTGCTCAGCCCAGACAACCCCCGGGACGCGTTGAAGGAAATCCTGGGTTTGAGGTTGGTTGGCCCGTTTGACATTCTGGCGGAGGCCCACCGTAGCTCAGCCAACCCCCAGCCCAACTACCACCTACACTGGAGGCACTTCTACGACCCTCCGGAGTACCAGACCGTACTGCAAGGGAATGGAGACAACCTGCTACACCTGGGTTACTACAGAGATAGTCCGGACTCCCTGCCTGTGTTCCTAGGGGAGAATGAAGCCAAGAAGGGCTGTACCATCACGCAGATGGGGGACAACATGTTTGCTGCTGTCCAtctatttctggggaggaagaggaaggagaggggcgGGTGTAAGGAAGGGGGCAAGGCTCTGGATAAcctggaggaggagttaagagaGAGGGTGGAGTCTCTGGGCTTTTCCCTGGAGCAGAAGACCAAAGGCATGAAGCAGAGAGACAAGAAGGTTGTCACCAAGACGTTCCATGGAGCCGGCCTGGTGGTTCCTGTTGATCAGAATGATGTTGGTTACCGGGAGCTGCCGGAGACAGACGcgagtATGAAGAGGCTGTGTAAGGCTATAGCGGAGGCCAGGGGTGATGAAGACAGGATAAAGGCTTTCGGCCCGCTGCAGGAGATGATCACCTTCGTCCAGTTCGCTAACGACGAGTGTGACTACGgcatggggctggagctgggcatagacctcttctgttacggttcacagTACTTCTATAAGGTGATCAGACAACTGCTGCCCATGGCCTACAGCCTGCTGAAGAGGGGCCTGTTTGGAGAGATCCTGGAGGCTCACCTCTCCAGCCGCTCCCACGACAACCTGGACCAACTCAGCTCAGCCTGAGGAATACcacgggagaggaggaagagagagaagaagagggatggATTGTTGTCAGCTCTGACCACTGTGTGTTTTTATGAGTCTTGTTGTGGTGCTGCTGTTGAATGGTACCAGGGGCGTCTCTCTGTGTGAATATGTGGAATAAAGGATTATATTTCTAAGAGATTGTC
>XM_036934272.1
CAGAAGTCCTAATGTGTTGTCGTTAGCTACACCGCTGTGTGCTTGTCTGCTGTCGAACGGAGAGGAGGAAAAAATATGACAGGGAAACGAAAAACTAAATCTACTCCTCAGTTCTTCTTTAGGAGTCAGATTCTGCCGAGGGGCAGTTGAAAAAGAAATCCCGGTCGGAGGAGCCGACAGCGAGACCGACTACTGCTGAGGTACCGGCCAGactgagggaggaggtggagagactCTATAAACTGAGGATGCCTGAAGACTTCTACCTCTTCTGGGACTTCTGCTCCCTGCTCAGCCCAGACAACCCCCGGGACGCGTTGAAGGAAATCCTGGGTTTGAGGTTGGTTGGCCCGTTTGACATTCTGGCGGAGGCCCACCGTAGCTCAGCCAACCCCCAGCCCAACTACCACCTACACTGGAGGCACTTCTACGACCCTCCGGAGTACCAGACCGTACTGCAAGGGAATGGAGACAACCTGCTACACCTGGGTTACTACAGAGATAGTCCGGACTCCCTGCCTGTGTTCCTAGGGGAGAATGAAGCCAAGAAGGGCTGTACCATCACGCAGATGGGGGACAACATGTTTGCTGCTGTCCAtctatttctggggaggaagaggaaggagaggggcgGGTGTAAGGAAGGGGGCAAGGCTCTGGATAAcctggaggaggagttaagagaGAGGGTGGAGTCTCTGGGCTTTTCCCTGGAGCAGAAGACCAAAGGCATGAAGCAGAGAGACAAGAAGGTTGTCACCAAGACGTTCCATGGAGCCGGCCTGGTGGTTCCTGTTGATCAGAATGATGTTGGTTACCGGGAGCTGCCGGAGACAGACGcgagtATGAAGAGGCTGTGTAAGGCTATAGCGGAGGCCAGGGGTGATGAAGACAGGATAAAGGCTTTCGGCCCGCTGCAGGAGATGATCACCTTCGTCCAGTTCGCTAACGACGAGTGTGACTACGgcatggggctggagctgggcatagacctcttctgttacggttcacagTACTTCTATAAGGTGATCAGACAACTGCTGCCCATGGCCTACAGCCTGCTGAAGAGGGGCCTGTTTGGAGAGATCCTGGAGGCTCACCTCTCCAGCCGCTCCCACGACAACCTGGACCAACTCAGCTCAGCCTGAGGAATACcacgggagaggaggaagagagagaagaagagggatggATTGTTGTCAGCTCTGACCACTGTGTGTTTTTATGAGTCTTGTTGTGGTGCTGCTGTTGAATGGTACCAGGGGCGTCTCTCTGTGTGAATATGTGGAATAAAGGATTATATTTCTAAGAGATTGTC
>TU1058291
GCGCACTCCGCTCCCCTAGATGGCGCTGTACATGACTTCCCAATGGCAGAAGTCCTAATGTGTTGTCGTTAGCTACACCGCTGTGTGCTTGTCTGCTGTCGAACGGAGAGGAGGAAAAAATATGACAGGGAAACGAAAAACTAAATCTACTCCTCAGGAGTCAGATTCTGCCGAGGGGCAGTTGAAAAAGAAATCCCGGTCGGAGGAGCCGACAGCGAGACCGACTACTGCTGAGGTACCGGCCAGactgagggaggaggtggagagactCTATAAACTGAGGATGCCTGAAGACTTCTACCTCTTCTGGGACTTCTGCTCCCTGCTCAGCCC

Function

NR:

description
histone PARylation factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934271.1 False 1352 mRNA 0.54 8 83115456 83131029
XM_036934272.1 False 1318 mRNA 0.54 8 83115501 83131029
TU1058291 True 333 lncRNA 0.53 2 83115455 83116403

Neighbor

gene id symbol gene type direction distance location
LOC118966663 NA coding upstream 12761 83022176 ~ 83102695 (+)
LOC118936273 nachra9 coding upstream 101062 82990848 ~ 83014394 (+)
LOC110515053 rhoh coding upstream 139126 82961071 ~ 82976330 (+)
LOC110512617 n4bp2 coding upstream 159643 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 coding upstream 304006 82793509 ~ 82811450 (+)
LOC118936836 NA coding downstream 10468 83139955 ~ 83143528 (+)
LOC118936837 LOC106592595 coding downstream 418259 83540003 ~ 83557399 (+)
LOC110512943 LOC106602128 coding downstream 429061 83560090 ~ 83562987 (+)
LOC110512947 NA coding downstream 502533 83586588 ~ 83639961 (+)
LOC118937117 NA coding downstream 613644 83744673 ~ 83744836 (+)
G929378 NA non-coding upstream 38237 83057524 ~ 83077219 (+)
G929371 NA non-coding upstream 77552 83037658 ~ 83037904 (+)
G929368 NA non-coding upstream 83679 83031542 ~ 83031777 (+)
G929364 NA non-coding upstream 103372 83011811 ~ 83012084 (+)
G929360 NA non-coding upstream 110867 83003998 ~ 83004589 (+)
G929401 NA non-coding downstream 37725 83168754 ~ 83169517 (+)
G929404 NA non-coding downstream 45931 83176960 ~ 83177376 (+)
G929408 NA non-coding downstream 57050 83188079 ~ 83188833 (+)
G929418 NA non-coding downstream 83088 83214117 ~ 83214726 (+)
G929370 NA other upstream 79965 83035112 ~ 83035491 (+)
G929305 NA other upstream 352968 82761605 ~ 82762488 (+)
LOC118936830 NA other upstream 372676 82740970 ~ 82780517 (+)
LOC110518749 LOC106592297 other downstream 762565 83893530 ~ 83968790 (+)
LOC110516172 htt other downstream 863644 83981478 ~ 84112196 (+)
LOC110515513 LOC106594142 other downstream 1005544 84130437 ~ 84282587 (+)
G930572 LOC106593948 other downstream 1023910 84154939 ~ 84155714 (+)

Expression


Co-expression Network