LOC110518749 (LOC106592297)


Basic Information

Item Value
gene id LOC110518749
gene name LOC106592297
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83893530 ~ 83968790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934289.1
TCTGGGGAGGGGAGGGAACGAACGAACGAAGCTGAGAGCCGAGCAGGAAGGAAAATTAACGAAGGCAGGAGAGGCTTTGAATGCTAACAAGCGTTATAGCTTTAACTACAATAGTAGCCGCCGTTGTTTAGCCTAAAAGGTGAAGAGTTTTTTTTGCTGTTGTGCTGAAAACATCAAACGATGGAGTCGGCGAACTAGTAGCCAACCACGATTGCAAAAGCCCAACACCTGGTAACCCGCCGAACTTGGAGAGCAAGCGAAGGCTATGCGCCAGCTGCAGaattcaccatcatcatcatcatcggtgCCGCTACCTTCATCTTTTTCAGTTGAAGTGAAATGTATTGCCTAGTCTGTATGGGAGACGGATCTTACACTTACTGACCATTACCATGGAGATAGAGAATATAGTCGCCAACACGGTACTGCTGAAGGCGAGAGAAGgtggaggagggaagaggaatgGGCGCAGTAAGAAATGGAAGGAGATGTTGAAACTTCCCCACATCAGTCTGTGTGAAGAGCTACGCCGCACCATCGacagggACTATACCAGTCTGTGTGAGAGACAGCCGATTGGTCGATTGCTGTTCCGTCAGTACTGTGACACCAGGCCAGAGCTCAAACGTTGCATCGAGTTCATGGACTCTGTGGCCCTGTACCAGCTCGCTCCGGATGAGAAGAGGAAGGACTGTGGAATCAGGATGTTGGAAACGTACTTTAACAACGGGtCGGCAGCCCATCTGCGAGATATACCTCAGGAGTTGGTAGGGGAGTGTCGTGAGAAGCTGGAACAGACGCCCTGCAAGGAACTCTTCAACGACTGCTGCAATATTGTTCGGGAGTACCTGAGTGGCTCTCCGTTCTCGTCCTACCAGGAGACGATGTACTTCTCCCGCTTTCTGCAGTGGAAGTGGCTGGAGAGgcAACCAGTAACCAAAAATACCTTCAGGCATTACAGAGTACTAGGAAAAGGTGGATTTGGTGAGgtgtgTGCCTGTCAGGTCCGGGCCACTGGTAAGATGTACGCCTGTAAAAAGCTGGAGaagaagagagtgaagaagagaaaaGGTGAAGCCATGGCACTAAACGAAAAACGCATTTTAGAAAAAGTTAACAGTAGTTTTGTAgtgaATCTAGCCTATGCGTATGAGACCAAGGATGCTCTGTGTTTAGTACTGACCATAATGAACGGAGGAGACCTGAAGTTTCACATTTATAATATGGGGAACTCTGGCTTTGATGAGCAGAGGGCCGTCTTCTACGCTGCAGAGATCTGTTCTGGGCTGGAAGACCTGCACCGGGAGAGGATAATCTACCGGGACTTAAAACCTGAAAACATTCTTCTAGACGACCGCGGACACATCCGTATCTCTGACCTGGGACTAGCCGTCCAGATTCCCGACTCGGAGACGATACGAGGGAGAGTGGGCACCGTAGGATACATGGCCCCAGAGGTGATCCAGAATGAGTCCTACTCCTTCAGTCCTGACTGGTGGGGTCTGGGCTGTCTGGTGTTTGAGATGATCCAGGGTCAGTCTCCCTTCCGCCGGCGTAAAGAACGAGtgaagagagaagaggtggaCAGACGAGTGAGAGAAGATCCCGAGGAATACTCTGACAAGTTCTCTGAGGAGGCCAAGGATATCTGCAGACAGCTGCTGGCCAAAGACCCCAAAGCCCGTCTGGGGTGCCAGGGGCGGGGCGGTGTGGAGGTGAAGGCTCATATCATCTTCAAGAACATCAACTTCAAACGCCTCGAGGCAGGCATTCTGGAACCTCCCTTCAGTCCTGAtccgcGGGCGGTGTACTGTAAAGATGTTCTGGATATAGAACAGTTCTCTACAGTGAAGGGAGTCAACCTGGACCCCACAGACGATGACTTCTACCACAAGTTTGTTACAGGAAGTGTCTCCATCCCCTGGCAGAACGAGATGATTGAGATGGAGTGTTTTAAGGAGATCAACGTCTATGAGACCGAGGGCCTGCTGTGTTCTGATCTGGATGTGAACAGACCCAACCCACCGCCAAAGAGAGGGTTCTTCTACAGGCTGTTCAGACGAGAGGCAAGTGGTGCTAGCTCTCCTCCCGCCCCTGCCGCCGCCGTGAGAGGTGGTGGGGGTTAAGGTCTGTTTAAAGAGTGGCTACGAAGACGAAGAGCACGAGGAGCCTTCCCGACTTTAAACcactcctgctctccctcttcctccttctgctctccctcctcctcctcgtcctcctcctcctcctgctctccct
>XM_036934291.1
TCTGGGGAGGGGAGGGAACGAACGAACGAAGCTGAGAGCCGAGCAGGAAGGAAAATTAACGAAGGCAGGAGAGGCTTTGAATGCTAACAAGCGTTATAGCTTTAACTACAATAGTAGCCGCCGTTGTTTAGCCTAAAAGGTGAAGAGTTTTTTTTGCTGTTGTGCTGAAAACATCAAACGATGGAGTCGGCGAACTAGTAGCCAACCACGATTGCAAAAGCCCAACACCTGGTAACCCGCCGAACTTGGAGAGCAAGCGAAGGCTATGCGCCAGCTGCAGaattcaccatcatcatcatcatcggtgCCGCTACCTTCATCTTTTTCAGTTGAAGTGAAATGTATTGCCTAGTCTGTATGGGAGACGGATCTTACACTTACTGACCATTACCATGGAGATAGAGAATATAGTCGCCAACACGGTACTGCTGAAGGCGAGAGAAGacagggACTATACCAGTCTGTGTGAGAGACAGCCGATTGGTCGATTGCTGTTCCGTCAGTACTGTGACACCAGGCCAGAGCTCAAACGTTGCATCGAGTTCATGGACTCTGTGGCCCTGTACCAGCTCGCTCCGGATGAGAAGAGGAAGGACTGTGGAATCAGGATGTTGGAAACGTACTTTAACAACGGGtCGGCAGCCCATCTGCGAGATATACCTCAGGAGTTGGTAGGGGAGTGTCGTGAGAAGCTGGAACAGACGCCCTGCAAGGAACTCTTCAACGACTGCTGCAATATTGTTCGGGAGTACCTGAGTGGCTCTCCGTTCTCGTCCTACCAGGAGACGATGTACTTCTCCCGCTTTCTGCAGTGGAAGTGGCTGGAGAGgcAACCAGTAACCAAAAATACCTTCAGGCATTACAGAGTACTAGGAAAAGGTGGATTTGGTGAGgtgtgTGCCTGTCAGGTCCGGGCCACTGGTAAGATGTACGCCTGTAAAAAGCTGGAGaagaagagagtgaagaagagaaaaGGTGAAGCCATGGCACTAAACGAAAAACGCATTTTAGAAAAAGTTAACAGTAGTTTTGTAgtgaATCTAGCCTATGCGTATGAGACCAAGGATGCTCTGTGTTTAGTACTGACCATAATGAACGGAGGAGACCTGAAGTTTCACATTTATAATATGGGGAACTCTGGCTTTGATGAGCAGAGGGCCGTCTTCTACGCTGCAGAGATCTGTTCTGGGCTGGAAGACCTGCACCGGGAGAGGATAATCTACCGGGACTTAAAACCTGAAAACATTCTTCTAGACGACCGCGGACACATCCGTATCTCTGACCTGGGACTAGCCGTCCAGATTCCCGACTCGGAGACGATACGAGGGAGAGTGGGCACCGTAGGATACATGGCCCCAGAGGTGATCCAGAATGAGTCCTACTCCTTCAGTCCTGACTGGTGGGGTCTGGGCTGTCTGGTGTTTGAGATGATCCAGGGTCAGTCTCCCTTCCGCCGGCGTAAAGAACGAGtgaagagagaagaggtggaCAGACGAGTGAGAGAAGATCCCGAGGAATACTCTGACAAGTTCTCTGAGGAGGCCAAGGATATCTGCAGACAGCTGCTGGCCAAAGACCCCAAAGCCCGTCTGGGGTGCCAGGGGCGGGGCGGTGTGGAGGTGAAGGCTCATATCATCTTCAAGAACATCAACTTCAAACGCCTCGAGGCAGGCATTCTGGAACCTCCCTTCAGTCCTGAtccgcGGGCGGTGTACTGTAAAGATGTTCTGGATATAGAACAGTTCTCTACAGTGAAGGGAGTCAACCTGGACCCCACAGACGATGACTTCTACCACAAGTTTGTTACAGGAAGTGTCTCCATCCCCTGGCAGAACGAGATGATTGAGATGGAGTGTTTTAAGGAGATCAACGTCTATGAGACCGAGGGCCTGCTGTGTTCTGATCTGGATGTGAACAGACCCAACCCACCGCCAAAGAGAGGGTTCTTCTACAGGCTGTTCAGACGAGAGGCAAGTGGTGCTAGCTCTCCTCCCGCCCCTGCCGCCGCCGTGAGAGGTGGTGGGGGTTAAGGTCTGTTTAAAGAGTGGCTACGAAGACGAAGAGCACGAGGAGCCTTCCCGACTTTAAACcactcctgctctccctcttcctccttctgctctccctcctcctcctcgtcctcctcctcctcctgctctccct
>XM_036934290.1
TCTGGGGAGGGGAGGGAACGAACGAACGAAGCTGAGAGCCGAGCAGGAAGGAAAATTAACGAAGGCAGGAGAGGCTTTGAATGCTAACAAGCGTTATAGCTTTAACTACAATAGTAGCCGCCGTTGTTTAGCCTAAAAGGTGAAGAGTTTTTTTTGCTGTTGTGCTGAAAACATCAAACGATGGAGTCGGCGAACTAGTAGCCAACCACGATTGCAAAAGCCCAACACCTGGTAACCCGCCGAACTTGGAGAGCAAGCGAAGGCTATGCGCCAGCTGCAGaattcaccatcatcatcatcatcggtgCCGCTACCTTCATCTTTTTCAGTTGAAGTGAAATGTATTGCCTAGTCTGTATGGGAGACGGATCTTACACTTACTGACCATTACCATGGAGATAGAGAATATAGTCGCCAACACGGTACTGCTGAAGGCGAGAGAAGgtggaggagggaagaggaatgGGCGCAGTAAGAAATGGAAGGAGATGTTGAAACTTCCCCACATCAGTCTGTGTGAAGAGCTACGCCGCACCATCGacagggACTATACCAGTCTGTGTGAGAGACAGCCGATTGGTCGATTGCTGTTCCGTCAGTACTGTGACACCAGGCCAGAGCTCAAACGTTGCATCGAGTTCATGGACTCTGTGGCCCTGTACCAGCTCGCTCCGGATGAGAAGAGGAAGGACTGTGGAATCAGGATGTTGGAAACGTACTTTAACAACGGGtCGGCAGCCCATCTGCGAGATATACCTCAGGAGTTGGTAGGGGAGTGTCGTGAGAAGCTGGAACAGACGCCCTGCAAGGAACTCTTCAACGACTGCTGCAATATTGTTCGGGAGTACCTGAGTGGCTCTCCGTTCTCGTCCTACCAGGAGACGATGTACTTCTCCCGCTTTCTGCAGTGGAAGTGGCTGGAGAGgcAACCAGTAACCAAAAATACCTTCAGGCATTACAGAGTACTAGGAAAAGGTGGATTTGGTGAGgtgtgTGCCTGTCAGGTCCGGGCCACTGGTAAGATGTACGCCTGTAAAAAGCTGGAGaagaagagagtgaagaagagaaaaGGTGAAGCCATGGCACTAAACGAAAAACGCATTTTAGAAAAAGTTAACAGTAGTTTTGTAgtgaATCTAGCCTATGCGTATGAGACCAAGGATGCTCTGTGTTTAGTACTGACCATAATGAACGGAGGAGACCTGAAGTTTCACATTTATAATATGGGGAACTCTGGCTTTGATGAGCAGAGGGCCGTCTTCTACGCTGCAGAGATCTGTTCTGGGCTGGAAGACCTGCACCGGGAGAGGATAATCTACCGGGACTTAAAACCTGAAAACATTCTTCTAGACGACCGCGGACACATCCGTATCTCTGACCTGGGACTAGCCGTCCAGATTCCCGACTCGGAGACGATACGAGGGAGAGTGGGCACCGTAGGATACATGGCCCCAGAGGTGATCCAGAATGAGTCCTACTCCTTCAGTCCTGACTGGTGGGGTCTGGGCTGTCTGGTGTTTGAGATGATCCAGGGTCAGTCTCCCTTCCGCCGGCGTAAAGAACGAGtgaagagagaagaggtggaCAGACGAGTGAGAGAAGATCCCGAGGAATACTCTGACAAGTTCTCTGAGGAGGCCAAGGATATCTGCAGACAGCTGCTGGCCAAAGACCCCAAAGCCCGTCTGGGGTGCCAGGGGCGGGGCGGTGTGGAGGTGAAGGCTCATATCATCTTCAAGAACATCAACTTCAAACGCCTCGAGGCAGGCATTCTGGAACCTCCCTTCAGTCCTGAtccgcGGGCGGTGTACTGTAAAGATGTTCTGGATATAGAACAGTTCTCTACAGTGAAGGGAGTCAACCTGGACCCCACAGACGATGACTTCTACCACAAGTTTGTTACAGGAAGTGTCTCCATCCCCTGGCAGAACGAGATGATTGAGATGGAGTGTTTTAAGGAGATCAACGTCTATGAGACCGAGGGCCTGCTGTGTTCTGATCTGGATGTGAACAGACCCAACCCACCGCCAAAGAGAGGGTTCTTCTACAGGCTGTTCAGACGAGAGGTCTGTTTAAAGAGTGGCTACGAAGACGAAGAGCACGAGGAGCCTTCCCGACTTTAAACcactcctgctctccctcttcctccttctgctctccctcctcctcctcgtcctcctcctcctcctgctctccctcctcctctccctcctcctcct
>XM_036934292.1
CTCAGGttctgaggggtgggccagtcgcACACATGCCTTTCTGTATGAAAGCTGAAACacaacatctctctgtcctacAGTCAACCAGTAACCTTCTgcAACCAGTAACCAAAAATACCTTCAGGCATTACAGAGTACTAGGAAAAGGTGGATTTGGTGAGgtgtgTGCCTGTCAGGTCCGGGCCACTGGTAAGATGTACGCCTGTAAAAAGCTGGAGaagaagagagtgaagaagagaaaaGGTGAAGCCATGGCACTAAACGAAAAACGCATTTTAGAAAAAGTTAACAGTAGTTTTGTAgtgaATCTAGCCTATGCGTATGAGACCAAGGATGCTCTGTGTTTAGTACTGACCATAATGAACGGAGGAGACCTGAAGTTTCACATTTATAATATGGGGAACTCTGGCTTTGATGAGCAGAGGGCCGTCTTCTACGCTGCAGAGATCTGTTCTGGGCTGGAAGACCTGCACCGGGAGAGGATAATCTACCGGGACTTAAAACCTGAAAACATTCTTCTAGACGACCGCGGACACATCCGTATCTCTGACCTGGGACTAGCCGTCCAGATTCCCGACTCGGAGACGATACGAGGGAGAGTGGGCACCGTAGGATACATGGCCCCAGAGGTGATCCAGAATGAGTCCTACTCCTTCAGTCCTGACTGGTGGGGTCTGGGCTGTCTGGTGTTTGAGATGATCCAGGGTCAGTCTCCCTTCCGCCGGCGTAAAGAACGAGtgaagagagaagaggtggaCAGACGAGTGAGAGAAGATCCCGAGGAATACTCTGACAAGTTCTCTGAGGAGGCCAAGGATATCTGCAGACAGCTGCTGGCCAAAGACCCCAAAGCCCGTCTGGGGTGCCAGGGGCGGGGCGGTGTGGAGGTGAAGGCTCATATCATCTTCAAGAACATCAACTTCAAACGCCTCGAGGCAGGCATTCTGGAACCTCCCTTCAGTCCTGAtccgcGGGCGGTGTACTGTAAAGATGTTCTGGATATAGAACAGTTCTCTACAGTGAAGGGAGTCAACCTGGACCCCACAGACGATGACTTCTACCACAAGTTTGTTACAGGAAGTGTCTCCATCCCCTGGCAGAACGAGATGATTGAGATGGAGTGTTTTAAGGAGATCAACGTCTATGAGACCGAGGGCCTGCTGTGTTCTGATCTGGATGTGAACAGACCCAACCCACCGCCAAAGAGAGGGTTCTTCTACAGGCTGTTCAGACGAGAGGCAAGTGGTGCTAGCTCTCCTCCCGCCCCTGCCGCCGCCGTGAGAGGTGGTGGGGGTTAAGGTCTGTTTAAAGAGTGGCTACGAAGACGAAGAGCACGAGGAGCCTTCCCGACTTTAAACcactcctgctctccctcttcctccttctgctctccctcctcctcctcgtcctcctcctcctcctgctctccct
>TU1059891
GCAGGAGAGGCTTTGAATGCTAACAAGCGTTATAGCTTTAACTACAATAGTAGCCGCCGTTGTTTAGCCTAAAAGGTGAAGAGTTTTTTTTGCTGTTGTGCTGAAAACATCAAACGATGGAGTCGGCGAACTAGTAGCCAACCACGATTGCAAAAGCCCAACACCTGGTAACCCGCCGAACTTGGAGAGCAAGCGAAGGCTATGCGCCAGCTGCAGaattcaccatcatcatcatcatcggtgCCGCTACCTTCATCTTTTTCAGTTGAAGTGAAATGTATTGCCTAGTCTGTATGGGAGACGGATCTTACACTTACTGACCATTACCATGGAGATAGAGAATATAGTCGCCAACACGGTACTGCTGAAGGCGAGAGAAGgtggaggagggaagaggaatgGGCGCAGTAAGAAATGGAAGGAGATGTTGAAACTTCCCCACATCAGTCTGTGTGAAGAGCTACGCCGCACCATCGacagggACTATACCAGTCTGTGTGAGAGACAGCCGATTGGTCGATTGCTGTTCCGTCAGTACTGTGACACCAGGCCAGAGCTCAAACGTTGCATCGAGTTCATGGACTCTGTGGCCCTGTACCAGCTCGCTCCGGATGAGAAGAGGAAGGACTGTGGAATCAGGATGTTGGAAACGTACTTTAACAACGGGtCGGCAGCCCATCTGCGAGATATACCTCAGGAGTTGGTAGGGGAGTGTCGTGAGAAGCTGGAACAGACGCCCTGCAAGGAACTCTTCAACGACTGCTGCAATATTGTTCGGGAGTACCTGAGTGGCTCTCCGTTCTCGT

Function

NR:

description
G protein-coupled receptor kinase 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934289.1 False 2259 mRNA 0.52 16 83893530 83968769
XM_036934291.1 False 2163 mRNA 0.52 15 83893530 83968769
XM_036934290.1 False 2219 mRNA 0.51 16 83893530 83968790
XM_036934292.1 False 1431 mRNA 0.52 11 83947033 83968769
TU1059891 True 806 TUCP 0.50 6 83893594 83946627

Neighbor

gene id symbol gene type direction distance location
LOC118937032 NA coding upstream 57271 83836116 ~ 83836259 (+)
LOC118936954 NA coding upstream 60279 83833088 ~ 83833251 (+)
LOC118936944 NA coding upstream 62231 83831136 ~ 83831299 (+)
LOC118936943 NA coding upstream 64183 83829184 ~ 83829347 (+)
LOC118936958 NA coding upstream 66217 83827150 ~ 83827313 (+)
LOC110516172 htt coding downstream 12688 83981478 ~ 84112196 (+)
LOC118937093 NA coding downstream 80939 84049729 ~ 84049858 (+)
LOC118936845 NA coding downstream 147027 84115817 ~ 84118470 (+)
LOC110515513 LOC106594142 coding downstream 161647 84130437 ~ 84282587 (+)
LOC118936846 LOC106597437 coding downstream 179122 84147912 ~ 84154174 (+)
G930501 NA non-coding upstream 12135 83880147 ~ 83881395 (+)
G930487 NA non-coding upstream 44454 83848844 ~ 83849076 (+)
G930486 NA non-coding upstream 45031 83844527 ~ 83848499 (+)
G930485 NA non-coding upstream 49528 83843787 ~ 83844002 (+)
G930466 NA non-coding upstream 63086 83818128 ~ 83830444 (+)
G930536 NA non-coding downstream 17261 83986051 ~ 83987850 (+)
G930543 NA non-coding downstream 56338 84025128 ~ 84028419 (+)
G930550 NA non-coding downstream 97766 84066556 ~ 84068955 (+)
G930508 NA non-coding downstream 145439 84114229 ~ 84114480 (+)
LOC110512947 NA other upstream 253569 83586588 ~ 83639961 (+)
G929370 NA other upstream 858039 83035112 ~ 83035491 (+)
LOC110512617 n4bp2 other upstream 937199 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 other upstream 1095208 82793509 ~ 82811450 (+)
G929305 NA other upstream 1131042 82761605 ~ 82762488 (+)
G930572 LOC106593948 other downstream 186149 84154939 ~ 84155714 (+)
G931108 LOC107756720 other downstream 707769 84676559 ~ 84677078 (+)
LOC110517086 LOC106590778 other downstream 1174530 85105137 ~ 85149776 (+)
LOC118936843 NA coding downstream 4221 83950848 ~ 83953723 (+)

Expression


Co-expression Network