LOC118936845


Basic Information

Item Value
gene id LOC118936845
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84115817 ~ 84118470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034300.1
GTCAAATCGTTGATTCGATCGATTTGGTTGATTTCGTTTCGATGTATTTCTATGGTAACTGTCGCCCGGGGCCCGACGATAGAGGGCGCGTTTCTATGGTAACTGTCGCCCGGGGCCCGACGATAGAGGGCGCGTTTCTATGGTAACTGTCGCCCGGGGGCCCGACGATAGAGGACGCGTTTCTATGGTAACTGTCGCCCGGGGGCCCGACGATAGAGGACGCGTTTCTATGGTAACTGTCGCCCGGGGACCGACGATAAGAGGATGAGGAGCAACACAGACCATCCAAAGGGGAACCTTGTAACCATAGCGACCAACGGCAATCTTTGACACATCAACAGGTTGGGGAATTAGTCCTTCAGTtgtggctgttttttttttaaatcagagctttaaaatggctccctattctctatgtagtgcacttcttttgacaggGGTCCATAGGGtcgtagtgcacttcttttgacaggGGTCCATAGGGtcgtagtgcacttcttttaacAGGGGTCCATAGGGTTGTAGTGCACtgcaaagggaatagggtgctatttcaggATACACTCAGAAAGACCGGGCCCTTGGTCATCAGTAGAGTTAGCCATCCTTATCCCAGCCAGAATGGCCCgtagtccaaagtagtgcactataaagggaacagggagccATTTTGGGACGGCATTGTTGTGATGTATCAGATGTGACtgtagtccagtccagtccagaccGTGTAGAATTCACCTAATACATCGGGATTAAGCCCCTTGTTGCTGTTTCTAAGGTTACGGGGgcgtcccaaatgacatcctatcccctatatagggtcccccccccccccccccccagtcatgtATTGGGTAATACACCAACGTTTGGGCATCACGGTTCCCTCTTCAGACCCTGAATGACTAGGGGGTTTATATAAGTCATGTTCTCTGGctgagctgtttattctctgttagtcagcacctcgaCACTAAGTCATGTTCTCTGGctgagctgtttattctctgatAGTCAGCACCTCAACACTAAGTCATGTTCTCTGGgtgagctgtttattctctgatAGTCAGCACCTCGACACTAAGTTTTATCTGGGTCTATATTTTAAACAACTAGAGACAGACTGAATGAGTTTTATCTGGGTCTATATCTCAACTAGAGACAGACTGAATGAGTTTTATCTGATGTCAGAGATACTGTAGAACAATCAATAAACCAAGTCAATTAGGGTTTTCAGACGTTAAAAACAGGTTTCTGATTTAGTGTTAACTTGCTAACTATTTAAAGAGAACATTCAGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTAATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGAGGTCGACTGATGTTTAGCACAGCTCTCGTTGAGAGacttttttaaaatccatttttagGTTAAAAGCTAAACTGACCCAAGTTCAGTGTCTTTGGGTGTCTTCAGTGGTCGCTAACCCTGGTCTAGAagggctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgcaggcttttAACACACATCATTCAGCTAACCAAGGTCTTGATGATTGTGATTAAACATAAAagcaggtgtgttagtgctgggctggaacagggGACCAGGGTTGGCCAGCCTTGTCCTACAACATGGTCTGAACAGAAGCACATGTGATGTGAGATTCTTCTTCCCCAGGAGGTTTTCACTGATCATCGGGAGGCTATGATAGAATCGGAACTCTCGTTCTATGCACAGAATTAGAATTCTGTTGGTGAGAGTTCCGTTCACTCCATTCTGGAAGCCTCTGCTGCTACACAACCCggttgtgttctgttctgtcacacttctctttctctctcttgtctgcAAGATTATACTGTTCATTCAAATATTGAATTTAAAAAGGCAATATTTTAACTTGATCAATTACCGGAGATGATATGATGTAGAAATTAATAAAAGTATTTAAACATGTAAAA
>TU1059887
TCAGAGATACTGTAGAACAATCAATAAACCAAGTCAATTAGGGTTTTCAGACGTTAAAAACAGGTTTCTGATTTAGTGTTAACTTGCTAACTATTTAAAGAGAACATTCAGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTAATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGAGGTCGACTGATGTTTAGCACAGCTCTCGTTGAGAGacttttttaaaatccatttttagGTTAAAAGCTAAACTGACCCAAGTTCAGTGTCTTTGGGTGTCTTCAGTGGTCGCTAACCCTGGTCTAGAagggctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgcaggcttttAACACACATCATTCAGCTAACCAAGGTCTTGATGATTGTGATTAAACATAAAagcaggtgtgttagtgctgggctggaacagggGACCAGGGTTGGCCAGCCTTGTCCTACAACATGGTCTGAACAGAAGCACATGTGATGTGAGATTCTTCTTCCCCAGGAGGTTTTCACTGATCATCGGGAGGCTATGATAGAATCGGAACTCTCGTTCTATGCACAGAATTAGAATTCTGTTGGTGAGAGTTCCGTTCACTCCATTCTGGAAGCCTCTGCTGCTACACAACCCggttgtgttctgttctgtcacacttctctttctctctcttgtctgcAAGATTATACTGTTCATTCAAATATTGAATTTAAAAAGGCAATATTTTAACTTGATCAATTACCGGAGATGATATGATGTAGAAATTAATAAAAGTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034300.1 False 2610 mRNA 0.43 2 84115817 84118470
TU1059887 True 1321 lncRNA 0.39 2 84117054 84118457

Neighbor

gene id symbol gene type direction distance location
LOC110516172 htt coding upstream 3621 83981478 ~ 84112196 (+)
LOC118937093 NA coding upstream 65959 84049729 ~ 84049858 (+)
LOC110518749 LOC106592297 coding upstream 147027 83893530 ~ 83968790 (+)
LOC118936843 NA coding upstream 162094 83950848 ~ 83953723 (+)
LOC118937032 NA coding upstream 279558 83836116 ~ 83836259 (+)
LOC110515513 LOC106594142 coding downstream 11967 84130437 ~ 84282587 (+)
LOC118936846 LOC106597437 coding downstream 29442 84147912 ~ 84154174 (+)
LOC110514511 LOC105020822 coding downstream 168908 84287378 ~ 84347895 (+)
LOC118936847 LOC106610425 coding downstream 296750 84415220 ~ 84425010 (+)
LOC118936848 LOC106610425 coding downstream 315450 84433920 ~ 84446516 (+)
G930508 NA non-coding upstream 1337 84114229 ~ 84114480 (+)
G930498 NA non-coding upstream 29455 83870182 ~ 84086362 (+)
G930550 NA non-coding upstream 46862 84066556 ~ 84068955 (+)
G930543 NA non-coding upstream 87398 84025128 ~ 84028419 (+)
G930536 NA non-coding upstream 127967 83986051 ~ 83987850 (+)
G930561 NA non-coding downstream 7337 84125807 ~ 84126206 (+)
G930577 NA non-coding downstream 38305 84156775 ~ 84156982 (+)
G930586 NA non-coding downstream 64494 84182964 ~ 84183346 (+)
G930587 NA non-coding downstream 65173 84183643 ~ 84184846 (+)
LOC110512947 NA other upstream 475856 83586588 ~ 83639961 (+)
G929370 NA other upstream 1080326 83035112 ~ 83035491 (+)
LOC110512617 n4bp2 other upstream 1159486 82905730 ~ 82956331 (+)
G930572 LOC106593948 other downstream 36469 84154939 ~ 84155714 (+)
G931108 LOC107756720 other downstream 558089 84676559 ~ 84677078 (+)
LOC110517086 LOC106590778 other downstream 1024850 85105137 ~ 85149776 (+)
LOC110515429 LOC106610570 other downstream 1079545 85198005 ~ 85221752 (+)

Expression


Co-expression Network