LOC118936848 (LOC106610425)


Basic Information

Item Value
gene id LOC118936848
gene name LOC106610425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84433920 ~ 84446516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934312.1
acagtggaagttacaacagtagaagatacaacagtagaagttacaacagtagaagGTACaccagtagaagatacaacagtagaagatacaacagtggaagatacaacagtagaagttcCTGCATTTCAACCCACGTGTGTAAAGATGTCAGAGGAAATCTATGAAAACTGCGATGGATTTAGTggcaaaaaaaattataaaataaataaaatagagaCCATGGACATTAATGATCAAATATACAACAACGAAAGACCCATCATGCCCCGCAAGAAGGATGGAGTTGGTGATCAACATTCAGTGTCTTGTCAGTGGTGGAAGAGATACTCTGGAGCTGCTGCAGGAtgtctggggctgctgtgtgttctcctactggctgggatcataggcCTGTTTCTCTACCAGAAAAACCAATTGACCAGTTCCAACAccctgactgaagagagagaccagttacagaccTGCGGAAACAACCTtactgaagagagagaccagctacagactagCAACAACACCCCGAacgaagagagagaccagctacagactagCGACAACACGCTGACCAAAGAGAGAAACCagttacagaccagatacaacaccctgaccaaagagagagaccagctacagaccagatacaacaccctgaccaaagagagagaccagctacagaaagagacagaacgTCTGAAACAATCTTTAGTTGAGAAAGTGTGTCCGGACGGATGGAAGAAGATTGGTAGCAGTTGTTATTACGTCTCTACTGAGTACAAATCCTGGGAGGAGAGCAGACAGGACTGCAGAAATAGAGGAGCAGACCTGGTGGTCATCAACAGCCAAGAGAAACAGACATTTGTCAATTGGTTATGTGGAGTAAAGAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACTACACACCACTGACCACAAAgtattggaacagtaaAGAGCCTAATGGTGgaagagcagagaactgtgtGTACTTCTACTCCTGGTCATCAGACACAGGAGCTTGGTGGGACTATGACTGTTCCTATCAATACAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACTCTCTGAACTGCTAAATAAGATTATGCTAAGTACTATATATCGTAATATATTTTCTACTTATTCAATTTACCTTGTCAACTACATACAATATATAACAAGACACATGTAGAATACATTATAA

Function

NR:

description
C-type lectin domain family 4 member M-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934312.1 True 1227 mRNA 0.43 6 84433920 84446516

Neighbor

gene id symbol gene type direction distance location
LOC118936847 LOC106610425 coding upstream 8910 84415220 ~ 84425010 (+)
LOC110514511 LOC105020822 coding upstream 86025 84287378 ~ 84347895 (+)
LOC110515513 LOC106594142 coding upstream 151333 84130437 ~ 84282587 (+)
LOC118936846 LOC106597437 coding upstream 280356 84147912 ~ 84154174 (+)
LOC118936845 NA coding upstream 315450 84115817 ~ 84118470 (+)
LOC110517443 LOC106610425 coding downstream 7115 84453631 ~ 84465566 (+)
LOC110513002 LOC106610425 coding downstream 25076 84471592 ~ 84502188 (+)
LOC110514534 LOC106610412 coding downstream 208267 84654783 ~ 84660378 (+)
LOC110498551 LOC106610561 coding downstream 388760 84835276 ~ 84841096 (+)
LOC110516354 LOC106610426 coding downstream 397452 84843532 ~ 84846806 (+)
G930671 NA non-coding upstream 24486 84404602 ~ 84409434 (+)
G930669 NA non-coding upstream 30653 84402988 ~ 84403267 (+)
G930663 NA non-coding upstream 41925 84391118 ~ 84391995 (+)
G930661 NA non-coding upstream 45552 84388071 ~ 84388368 (+)
G930659 NA non-coding upstream 50495 84383173 ~ 84383425 (+)
G930694 NA non-coding downstream 15374 84461890 ~ 84481110 (+)
G930698 NA non-coding downstream 34914 84481430 ~ 84587609 (+)
G930696 NA non-coding downstream 78856 84525372 ~ 84536867 (+)
G930725 NA non-coding downstream 94043 84540559 ~ 84606547 (+)
G931077 NA non-coding downstream 196093 84642609 ~ 84642815 (+)
G930572 LOC106593948 other upstream 278206 84154939 ~ 84155714 (+)
LOC110516172 htt other upstream 424489 83981478 ~ 84112196 (+)
LOC110518749 LOC106592297 other upstream 487293 83893530 ~ 83968790 (+)
LOC110512947 NA other upstream 793959 83586588 ~ 83639961 (+)
G931108 LOC107756720 other downstream 230043 84676559 ~ 84677078 (+)
LOC110517086 LOC106590778 other downstream 696804 85105137 ~ 85149776 (+)
LOC110515429 LOC106610570 other downstream 751499 85198005 ~ 85221752 (+)
LOC110515949 LOC106591060 other downstream 886040 85236443 ~ 85448659 (+)
G931587 NA other downstream 1027770 85474286 ~ 85475128 (+)

Expression


Co-expression Network