LOC110517443 (LOC106610425)


Basic Information

Item Value
gene id LOC110517443
gene name LOC106610425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84453631 ~ 84465566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934313.1
AGACCCATCATGCCCTACAAGAAGGATGGAGTTGGTGATCAACATTCAGTGTCTTGTCAGTGGTGGAAGAGATACTCTGGAGCTGCTGCAGGAtgtctggggctgctgtgtgttctcctactggctgggatcataggcCTGTTTCTCTACCAGAAAAACCAATTGACCAGTTCCAACAccctgactgaagagagagaccagttacagaccTGCGGAAACAACCTtactgaagagagagaccagctacagactagCAACAACACCCCGAacgaagagagagaccagctacagactagCGACAACACGCTGACCAAAGAGAGAAACCagttacagaccagatacaacaccctgaccaaagagagagaccagctacagaccagatacaacaccctgaccaaagagagagaccagctacagactagatacaacaccctgaccaaagagagagaccagctacagaaagagacagaacgTCTGAAACAATCTTTAGTTGAGAAAGTGTGTCCGGACGGATGGAAGAAGATTGGTAGCAGTTGTTATTACGTCTCTACTGAGTACAAATCCTGGGAGGAGAGCAGACAGGACTGCAGAAATAGAGGAGCAGACCTGGTGGTCATCAACAGCCAAGAGAAACAGACATTTGTCAATTGGTTATGTGGAGTAAAGAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACTACACACCACTGACCACAAAgtattggaacagtaaAGAGCCTAATGGTGgaagagcagagaactgtgtGTACTTCTACTCCTGGTCATCAGACACAGGAGCTTGGTGGGACTATGACTGTTCCTATCAATACAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACTCTCTGAACTGCTAAATAAGATTATGCTAAGTACTATATATCGTAATATATTTTCTACTTATTCAATTTACCTTGTCAACTACATACAATATATAACAAGACACATGTAGAATACATTATAA
>XR_005034304.1
AGTTTTCCCCTCGTCCCCCTCTCTGATGCGCACAAGGTGGTAGCCATTCCGGAGGTCCAGTCTGGTGAACACAGTGGCACTGATGAGTGTGCAAGGATACTTGTTCTTGATGTTATTCAGTCTAGGCCTCAGTCTAGGCCTCAGTGACCCATCCTTCTTCACAAAGAAAAACTCAGCACCCACCCCTGGGAGGAAGAAGGCCTGATAAGTCCTGCAACCAGGGAGTCCTGGATGTACCTCTCCATAGCCTCCAGCTCGGGGCGAGAGAGGTTATACAACTGGCTACAGGGGAGAGGAGCTCCAGGCTGGAGGACAATGGTGCAGTTGTACGGCTGATGAGGTGGCAGCGACAGGACGCGGTGCTTGCTGAACATAGGCGCTAGATCGTGATACTCTGGAGGAACTGATGACAGGTCAGGAGGTTCTGGAATGGGGCACAGACAAGGCATCGGCAAGGGCAAAATGTAGACAATTCTAGTGACAAAATTAATTCCAAGTGGTTACCCTTCCAGCGGTCCAGTCGATCTGAGGGTTGTGCAACTTTAACCATGGATGGCCAAGAACCAGGGGAGAGTGAGGACAGTCGATTATGTGGAAAGTGATCCTTTCCTGGTGGTTTCCAGAGAGATGCAGGATGACAGGGGCGGTCCTCTCCCAGACACTGGCGAGGAGCTGTCCGTTGAGAGCGTTGGCATCGAGGGGTGAATCGAGTGAAACAGAGTCCAGGCCCAACTGGGTAACGACACCACGGTCCAGGAAACTCTCGTCGGCGCCTGAGTCGATGAGAGCAGGCAGGGGAAGAACCTGGCTCTGCCACACGAGGGCGCCGTCAAGCAGGGGTCTGGGGGAGAGATGGGCAGGCGATTTGGCTCAACGGTAGGTCCCCCACTACTGCCGAGCCACCACTTTTGGTGAAAACaactgaatccattttagaataaggctgtaacgtaacaaaatgtatagaaagtcaagaggtctgaaaactttccaaatgctctgTAGCCATGTTATTTAGACTTGTTATTCTTCTTCgtttattcactgtgtatttatttattgtgtcACTATTTTCAATGTTGTatatttaactctgcattgttggaaaagtctgttgtttacgaagcaaaTGACAAATTACGTTTGGTTTTGATTGAAATAGGTGCCGGCAATCATTTTGGGTGCCTGAACTCTGCACTATGTTTAAGCCAATATTCTGGAAGTAGTTCTGGAAGTCAAGCAGTAGAATATGTGAGGTTCTGGAACTCAGTTCTGGTGTTCTGTCCCTTGTCAATCTTGTGTATTTCCCTCAGTGATTcaaacagaaaatggacacaaaATTAGACACAAATACAGCAAGTTTTTCTGGTAATACTTTGTGCTTCAGTGTCTTGTCAGTGGTGGAAGAGATACTCTGGAGCTGCTGCAGGAtgtctggggctgctgtgtgttctcctactggctgggatcataggcCTGTTTCTCTACCAGAAAAACCAATTGACCAGTTCCAACAccctgactgaagagagagaccagttacagaccTGCGGAAACAACCTtactgaagagagagaccagctacagactagCAACAACACCCCGAacgaagagagagaccagctacagactagCGACAACACGCTGACCAAAGAGAGAAACCagttacagaccagatacaacaccctgaccaaagagagagaccagctacagaccagatacaacaccctgaccaaagagagagaccagctacagactagatacaacaccctgaccaaagagagagaccagctacagaaagagacagaacgTCTGAAACAATCTTTAGTTGAGAAAGTGTGTCCGGACGGATGGAAGAAGATTGGTAGCAGTTGTTATTACGTCTCTACTGAGTACAAATCCTGGGAGGAGAGCAGACAGGACTGCAGAAATAGAGGAGCAGACCTGGTGGTCATCAACAGCCAAGAGAAACAGACATTTGTCAATTGGTTATGTGGAGTAAAGAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACTACACACCACTGACCACAAAgtattggaacagtaaAGAGCCTAATGGTGgaagagcagagaactgtgtGTACTTCTACTCCTGGTCATCAGACACAGGAGCTTGGTGGGACTATGACTGTTCCTATCAATACAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACTCTCTGAACTGCTAAATAAGATTATGCTAAGTACTATATATCGTAATATATTTTCTACTTATTCAATTTACCTTGTCAACTACATACAATATATAACAAGACACATGTAGAATACATTATAA

Function

NR:

description
C-type lectin domain family 4 member M-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934313.1 False 1017 mRNA 0.45 6 84453631 84465566
XR_005034304.1 True 2355 mRNA 0.47 6 84457696 84465566

Neighbor

gene id symbol gene type direction distance location
LOC118936848 LOC106610425 coding upstream 7115 84433920 ~ 84446516 (+)
LOC118936847 LOC106610425 coding upstream 28621 84415220 ~ 84425010 (+)
LOC110514511 LOC105020822 coding upstream 105736 84287378 ~ 84347895 (+)
LOC110515513 LOC106594142 coding upstream 171044 84130437 ~ 84282587 (+)
LOC118936846 LOC106597437 coding upstream 300067 84147912 ~ 84154174 (+)
LOC110513002 LOC106610425 coding downstream 6026 84471592 ~ 84502188 (+)
LOC110514534 LOC106610412 coding downstream 189217 84654783 ~ 84660378 (+)
LOC110498551 LOC106610561 coding downstream 369710 84835276 ~ 84841096 (+)
LOC110516354 LOC106610426 coding downstream 378402 84843532 ~ 84846806 (+)
LOC110517086 LOC106590778 coding downstream 639571 85105137 ~ 85149776 (+)
G930671 NA non-coding upstream 44197 84404602 ~ 84409434 (+)
G930669 NA non-coding upstream 50364 84402988 ~ 84403267 (+)
G930663 NA non-coding upstream 61636 84391118 ~ 84391995 (+)
G930661 NA non-coding upstream 65263 84388071 ~ 84388368 (+)
G930659 NA non-coding upstream 70206 84383173 ~ 84383425 (+)
G930698 NA non-coding downstream 15864 84481430 ~ 84587609 (+)
G930696 NA non-coding downstream 59806 84525372 ~ 84536867 (+)
G930725 NA non-coding downstream 74993 84540559 ~ 84606547 (+)
G931077 NA non-coding downstream 177043 84642609 ~ 84642815 (+)
G931078 NA non-coding downstream 177333 84642899 ~ 84643106 (+)
G930572 LOC106593948 other upstream 297917 84154939 ~ 84155714 (+)
LOC110516172 htt other upstream 444200 83981478 ~ 84112196 (+)
LOC110518749 LOC106592297 other upstream 507004 83893530 ~ 83968790 (+)
LOC110512947 NA other upstream 813670 83586588 ~ 83639961 (+)
G931108 LOC107756720 other downstream 210993 84676559 ~ 84677078 (+)
LOC110515429 LOC106610570 other downstream 732449 85198005 ~ 85221752 (+)
LOC110515949 LOC106591060 other downstream 866990 85236443 ~ 85448659 (+)
G931587 NA other downstream 1008720 85474286 ~ 85475128 (+)

Expression


Co-expression Network