LOC110514534 (LOC106610412)


Basic Information

Item Value
gene id LOC110514534
gene name LOC106610412
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84654783 ~ 84660378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934593.1
TGTAGCAGCTCGAGGATGCAGCAGGGAGGAGGACATTTACTACCCGCCGAGGACGCGTGGATGGGATCTAACTGATTTGTCCTGCTTGGTGATTAAGTTATGTCGAATCGTAACACCTTTGACAGTTTGTCTTCGGAgtatttttgaatatttttctgaTTTTAGTCCGTTTCTGTCTCGGAGCGGATTGGAGATGACAACGCTGAATGTAAGAggcaggtgggagagagagagaaagggctgagagagaggggaaagggaccGTGTGATTTCAACGGTTTTCTCCAAAGACATGTGAAATATAACTAACCCTTCGCGGATGTGTGCTAGCGAATAACACATATTATTTCCCtgaattttttattttcttttgtttTTACCCTCGTGCATGAGTGATTCATTAAAATAATGGATTTCTTGAATTTCTCCGGGGTGGTGGACGAGCGGAATACCACATTCCCCAACTCATCGGCTACCGGGGACAGTgagtactctctcctctccataaCCGGACTGACGGTAGTCGTCGGCTTTCTCATCCTGTTTACCATTGTGGGCAACGTGCTGGTGGTCATCGCCGTGTTGACCAGCCGCGCTCTCAAACCGCCGCAGAACCTCTTTCTGGTGTCCCTGGCCAGCGCGGACATCCTAGTGGCTACTCTCGTCATGCCTTTCTCTTTAGCTAACGAACTCATGGGCTACTGGTTCTTCGGGAAAGTTTGGTGCGACATCTACTTGGCGTTGGACGTTCTCTTTTGCACGTCGTCTATAGTTCACCTGTGCGCTATCAGTCTCGATCGTTACTGGTCGATCACCCAGGCGATAGAATACAACCAGAAGCGGACGCCTACACGGCTAAACGGGATGATCGTGGTGGTCTGGCTGATCTCGGCCGTTATTTCCTTTCCGCCGTTGATCTCCATGGACAGGAGCAGCGGAGGGGAGATCAGTCCTCAGTGTCGGCTGAACGATGAGACCTGGTATATTCTCTACTCCAGCATAGGATCCTTCTTCGCTCCCTGCGTTATCATGATACTAGTGTACATCAGGATCTACCAGGTTGCTAAGACGCGGACGAGGACCATGtcggagaagaagagagaggtggaggacaaCGGAACTGCCCCGTTACATTTTAACGGGTTAGGGCAGGGGGGCGAGGAGGAGGGGTGCGGAGGGTCTCTGAAGGAAAACGGTGGGGGCGGAGGGGTTGCCCGGGAGAACGGGCACTGCCAGAGCCAGCAGAAGACGCCGGTGCCACAGGGGATGTTACCCAACGAACCCAAATTAACCCCCGACCCTGACGATGGAGACGACTTTGACGACAGCAGCTCGTCGGACGAAAAACCCACATCCGCCAAAAAacattcctcttcctcttcctcttcccatcagcatcaacaccaccaccaccaccaccaccaccaccatcaccatgacGACAAGAAGGATTCCAAACCTTCAGAGAGAAGGAAGTCCACAGGAAGCAGGAAGAGCAGCTTGGCTTCGTCCAAACGCTCAGAGAGCAAGAAGTCGCGTGCCAGCTCTAAGTCCATCGAGCTGTTTTCGTCCCGTAGGAAACGGCGGAGCACCGTCAACAGGAACAAAATAACAGCGGCGAGGGAGAAGAGGTTTACCTTCGTCTTGGCGGTGGTGATGGGCGTCTTCGTGATCTGCTGGTTCCCCTTCTTCTTCAGCTACAGCCTGTATGGAGTGTGCCGGGCGCCGTGTGAGATCCCCCAGTCTCTTTTTAAGTTCTTCTTCTGGATAGGCTACGTCAACAGCTCCCTCAACCCCGTCATCTACACCATCTTCAACCAGGACTTCAGACGAGCATTCCAGAAGATTCTAGTCTGCAAGTCAGGGAAGAGGTCTTTCTGAACGTGGATAGTCcaacagtatatactgtacagtacatggaCCTATATACAAGTCAGGGAAGAGGTCTTTCTGAACGTGGATAGTCcaacagtatatactgtacagtacatggaCCTATATACAAGTCATGGAAGAGGTTCTCCTGATGGGGAAGTCACATGGACCCTAATGCTTTCTCCATTCACATGGACCCTAAAGACCTTGATGGTTTCCCTAGTCACATGGACCCTAATCCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATCGTTTCCCTAGTCACATGGACCCTAATGACCCTAATCCTTTCCCTAGTCACATGGACCCTAATGCTTTCCTTAGTCACATGGACACTAATGCTTTCTCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATCCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATCCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCTAATGCTTTCCCTAGTCACATGGACCCCAATGCTTTCCCTAGTCACATGGACCAATATACATTGGGCTGTATTTAAAATGCCAACATATTCTCTATGAAGGTCTTATGGATTCACATGTGACCTGGCAGaggaaggatatcaaggatctggaaaatagtctgtatggaggaatggtctaag

Function

NR:

description
alpha-2C adrenergic receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0065008 regulation of biological quality biological_process
GO:0044057 regulation of system process biological_process
GO:0016020 membrane cellular_component
GO:0004935 adrenergic receptor activity molecular_function

KEGG:

id description
K22814 Octalpha; octopamine receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934593.1 True 2786 mRNA 0.50 3 84654783 84660378

Neighbor

gene id symbol gene type direction distance location
LOC110513002 LOC106610425 coding upstream 152595 84471592 ~ 84502188 (+)
LOC110517443 LOC106610425 coding upstream 189217 84453631 ~ 84465566 (+)
LOC118936848 LOC106610425 coding upstream 208267 84433920 ~ 84446516 (+)
LOC118936847 LOC106610425 coding upstream 229773 84415220 ~ 84425010 (+)
LOC110514511 LOC105020822 coding upstream 306888 84287378 ~ 84347895 (+)
LOC110498551 LOC106610561 coding downstream 174898 84835276 ~ 84841096 (+)
LOC110516354 LOC106610426 coding downstream 183590 84843532 ~ 84846806 (+)
LOC110517086 LOC106590778 coding downstream 444759 85105137 ~ 85149776 (+)
LOC110515429 LOC106610570 coding downstream 537627 85198005 ~ 85221752 (+)
LOC110515949 LOC106591060 coding downstream 576065 85236443 ~ 85448659 (+)
G931078 NA non-coding upstream 11677 84642899 ~ 84643106 (+)
G931077 NA non-coding upstream 11968 84642609 ~ 84642815 (+)
G930725 NA non-coding upstream 48236 84540559 ~ 84606547 (+)
G930698 NA non-coding upstream 67174 84481430 ~ 84587609 (+)
G930696 NA non-coding upstream 117916 84525372 ~ 84536867 (+)
G931091 NA non-coding downstream 3170 84663548 ~ 84667835 (+)
G931095 NA non-coding downstream 7583 84667961 ~ 84669673 (+)
G931096 NA non-coding downstream 9491 84669869 ~ 84670167 (+)
G931104 NA non-coding downstream 10822 84671200 ~ 84671432 (+)
G931110 NA non-coding downstream 16950 84677328 ~ 84677706 (+)
G930572 LOC106593948 other upstream 499069 84154939 ~ 84155714 (+)
LOC110515513 LOC106594142 other upstream 509109 84130437 ~ 84282587 (+)
LOC110516172 htt other upstream 645352 83981478 ~ 84112196 (+)
LOC110518749 LOC106592297 other upstream 708156 83893530 ~ 83968790 (+)
LOC110512947 NA other upstream 1014822 83586588 ~ 83639961 (+)
G931108 LOC107756720 other downstream 16181 84676559 ~ 84677078 (+)
G931587 NA other downstream 813908 85474286 ~ 85475128 (+)

Expression


Co-expression Network