LOC110498551 (LOC106610561)


Basic Information

Item Value
gene id LOC110498551
gene name LOC106610561
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84835276 ~ 84841096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575212.2
CTGCAGCAGTAACTGAGGGGAGGCGAGAGGCGAGTCCCCGTCAGACAGAGCAATTCTCGGTTCCGTCCCAAATGGTAGCCTATTCCTTTTATAGTACATACCTTTGACCAGGGTCTGTAGGGctagggtcaaaagtagtgcactgtgtaaggGATAGAGGTGCCATTTGCGACggaaacctctctctcctctcctggagTCATCCCATTTGATATTGTGGCTTGTCCAATCAGCGGATACCCTCCGCTCGTCAACCGTTTGCCTTGACTCGCTTCCCCGCTGTAGGCTACAACCTCTCCGGTCTCTACCCGGTGCTGTGCTGGCACCACGGAGCTCCAGGGCCGCCCTGGTAACGATTTCCACGTTTCGGTGATGAGGATTTATCATTTATAAACAGGGGAGAATGGAGAAACCCGGTTGAGATGGTGCTTTTAAGATCCGACCGggacacacatcaacaacaacgaAAATAACAGTTTTGTTGTGCGGAGTAACAGAACACACGTGCTCGTCGTCAACTGTATTGAAGGTTTGGACGGACGCAGGAGGACCCGTCGTAATTGTTTTGTTTGAGTGGCCAAGGAAATGCATTTGTTTTTCATTTAAAAACATCATGCACGACAAGGCGACAGACACTCAGGCTTCCACACCGTCAAAAGTCTCCTCGTTTTACATCGAAAACCTACTCGGCTCGAGGAAGAATGGAGAGTCAACGCATTTCAACCGAcaggtcaacaacaacaacaacagccagtaTAGTAGCAGGACCGCGGAGGAGAGTATGGAGCGGAATGAGATGGTCTGCCCTAGCCGAGTCTTAGCGGGACACCCCAGCCAAGTGGCCGGTCAAGTAGCAGCCTGCTCCGGCTACGGCGCCGAGGGTTCCCCCCGGAGAGCCTCGCAGTTAGAACGGAACAGAGGAGCCGTAGCCGTTAACGTCAAACCACTCAGTCTCAAGAGGTCCAACAATCCAAAAGAGGACAGTAGATGCTCAGATGACCGTTGCTGCTCCCACTCAGCCAGCGACCGAGACTCCGTTTCTCCCGCCGTGTCAGAAGAACCCACAGAAGGCAGCGACAAAACGGGACGGAAAACGGCAGACAGCTTCCTGACCGACGACAACGACGAGACGCAGAACGCCTTTGACGATCAGTCGGACCAGGAAGCTCCTCTGGACCCGGAAGCCCCTCTGGACCCGAGCTCTATCCGGAAGAAGAAAACTAGAACCGTTTTCAGTCGGAGTCAGGTGTTTCAGTTGGAGTCGACGTTCGATATGAAACGGTACCTGAGCAGTTCTGAACGGGCAGGTATCGCGGCCTCTCTCCAGCTAACGGAAACGCAGGTGAAAATCTGGTTCCAGAATCGACGGAACAAATGGAAGAGACAGATGGCCGCGGATCAAGAGACCGCAAACGTTTCCCACTCGTCCCAACGGATAGTCCGAGTTCCGATTCTATATCACGAAAGCTCCACGCCCTCGACGTTGGGTTTCAACGTCAACGTGTCCCAGGTGTCCCCGCGTTTAATGAGTTTCTCGAACCCTGTGAACTATCCCTTCTCCTCCTTTGCGCACTCCATGAGTTTACTACGCTCGCAAATTACCGGGTTGGTGTAAAGACCGTTACGGAGTTTTCACTACTTTTTTTGTTCAGGTCACGTCATTAATTTATTAAATCGTGCAATAACAATAACTGCAATGGCCGCGGAAAACTATACAAGTAAAACAGTGAAGATATGGCCTTTAGACTTACAATTGATCGCGgtgttttttaaaaaaatgttgtaaTTGTACTACTTTACATATCTACTTTTATTATATTATCGCCACACTAGATAATGATAGTGTTTGTTCCGGTCCACattgatatgtttttttttatacacaTTTATTTGTGCAAATACTTTTAT

Function

NR:

description
homeobox protein HMX1-like

GO: NA

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575212.2 True 1908 mRNA 0.50 2 84835276 84841096

Neighbor

gene id symbol gene type direction distance location
LOC110514534 LOC106610412 coding upstream 174898 84654783 ~ 84660378 (+)
LOC110513002 LOC106610425 coding upstream 333088 84471592 ~ 84502188 (+)
LOC110517443 LOC106610425 coding upstream 369710 84453631 ~ 84465566 (+)
LOC118936848 LOC106610425 coding upstream 388760 84433920 ~ 84446516 (+)
LOC118936847 LOC106610425 coding upstream 410266 84415220 ~ 84425010 (+)
LOC110516354 LOC106610426 coding downstream 2872 84843532 ~ 84846806 (+)
LOC110517086 LOC106590778 coding downstream 264041 85105137 ~ 85149776 (+)
LOC110515429 LOC106610570 coding downstream 356909 85198005 ~ 85221752 (+)
LOC110515949 LOC106591060 coding downstream 395347 85236443 ~ 85448659 (+)
trnae-cuc-167 NA coding downstream 615328 85456424 ~ 85456495 (+)
G931149 NA non-coding upstream 12476 84822283 ~ 84822800 (+)
G931144 NA non-coding upstream 86368 84748320 ~ 84748908 (+)
G931121 NA non-coding upstream 131994 84702237 ~ 84703282 (+)
G931110 NA non-coding upstream 157570 84677328 ~ 84677706 (+)
G931104 NA non-coding upstream 163844 84671200 ~ 84671432 (+)
G931160 NA non-coding downstream 577 84841673 ~ 84842033 (+)
G931161 NA non-coding downstream 1108 84842204 ~ 84842418 (+)
G931162 NA non-coding downstream 1482 84842578 ~ 84842858 (+)
G931163 NA non-coding downstream 1806 84842902 ~ 84843506 (+)
G931108 LOC107756720 other upstream 158198 84676559 ~ 84677078 (+)
G930572 LOC106593948 other upstream 679562 84154939 ~ 84155714 (+)
LOC110515513 LOC106594142 other upstream 689602 84130437 ~ 84282587 (+)
LOC110516172 htt other upstream 825845 83981478 ~ 84112196 (+)
LOC110518749 LOC106592297 other upstream 888649 83893530 ~ 83968790 (+)
G931587 NA other downstream 633190 85474286 ~ 85475128 (+)
G931588 NA other downstream 634525 85475621 ~ 85476131 (+)

Expression


Co-expression Network