LOC118936854


Basic Information

Item Value
gene id LOC118936854
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85464789 ~ 85466981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034307.1
CGAATCTGACGCGATGAGACCCAGGACAGGAGACTTTCTccagcaaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTATACAtgtgtagccgatctgtgtatgaACCCTAAAACGTTTGGTATACaaattagttcagaacctagctatgaacctcagctTTCCTAGCCTGTTGTATGAACTTCAAAACAGTCTGAAGGACactatggattgagtagaatataatataacgttgtgccaaggatgcaagtcgtatatacatgtagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctacctTGGCAAATAAAAGGCGCAGTTCA
>TU1061490
gtctggGAGGGTGtaagaatattttgaagataaatacacaacccAGAGACAGAGTACAAGAGACTTTCTccagcaaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTATACAtgtgtagccgatctgtgtatgaACCCTAAAACGTTTGGTATACaaattagttcagaacctagctatgaacctcagctTTCCTAGCCTGTTGTATGAACTTCAAAACAGTCTGAA
>TU1061492
gtctggGAGGGTGtaagaatattttgaagataaatacacaacccAGAGACAGAGTACAAGAGGTCAAAGGAGGAGAGTCAATAGAATACTAACAATCAAGGGAAATTATTGATTGAGGAAATTATTGATCCGTGGttcagagacatgggaggagtATGTCTTCTGAAATatgatacttgttatttggccattggctaGTTTTATTGgaaggaattctaattggtcaaccacaggctagggctgggttataaaactacatgctgtccctttgttctgtggagagagaatcacaggagagaatcactgagagaaTCTCTGAgagagaatcacaggagagaatctctgagagagaatcactggagagaatcacaggag
>TU1061477
ACCCAGGACAGGAGACTTTCTccagcaaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTAT
>TU1061482
ACCCAGGACAGGAGACTTTCTccagcaaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTATACAtgtgtagccgatctgtgtatgaACCCTAAAACGTTTGGTATACaaattagttcagaacctagctatgaacctcagctTTCCTAGCCTGTTGTATGAACTTCAAAACAGTCTGAAGGACactatggattgagtagaatataatataacgttgtgccaaggatgcaagtcgtatatacatgtagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctacctTGGCAAATAAAAGGCGCAGTT
>TU1061485
ACCCAGGACAGGAGACTTTCTccagcaaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTATACAtgtgtagccgatctgtgtatgaACCCTAAAACGTTTGGTATACaaattagttcagaacctagctatgaacctcagctTTCCTAGCCTGTTGTATGAACTTCAAAACAGTCTGAA
>TU1061481
aaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTAT
>TU1061484
aaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTATACAtgtgtagccgatctgtgtatgaACCCTAAAACGTTTGGTATACaaattagttcagaacctagctatgaacctcagctTTCCTAGCCTGTTGTATGAACTTCAAAACAGTCTGAAGGACactatggattgagtagaatataatataacgttgtgccaaggatgcaagtcgtatatacatgtagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctacctTGGCAAATAAAAGGCGCAGTT
>TU1061488
aaagatggctgacaacaATACCAGGACGGAAGCAAATggactcctgaaacaaccagcaaaccaggctgtcgtcttgtgaaacagtaGATGTaaataatctagctagctaaagcatttactgcaaaatGAATGGACCGttttgtaagcttgccttgctgaTATTTACAATGCAGATGAAGTAACGTAGCTAGCTATTTTCTTGCTTCTTGTGCAGTGCAGAATAAAAATATCTGTATGCCTATACAtgtgtagccgatctgtgtatgaACCCTAAAACGTTTGGTATACaaattagttcagaacctagctatgaacctcagctTTCCTAGCCTGTTGTATGAACTTCAAAACAGTCTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034307.1 False 566 mRNA 0.40 2 85466176 85466981
TU1061490 False 433 lncRNA 0.40 3 85464789 85466818
TU1061492 False 375 lncRNA 0.41 2 85464789 85465217
TU1061477 False 268 lncRNA 0.41 2 85466194 85466701
TU1061482 False 546 lncRNA 0.40 2 85466194 85466979
TU1061485 False 385 lncRNA 0.41 2 85466194 85466818
TU1061481 False 242 lncRNA 0.39 2 85466220 85466701
TU1061484 False 520 lncRNA 0.39 2 85466220 85466979
TU1061488 True 359 lncRNA 0.39 2 85466220 85466818

Neighbor

gene id symbol gene type direction distance location
trnae-cuc-167 NA coding upstream 9681 85456424 ~ 85456495 (+)
LOC110515949 LOC106591060 coding upstream 17517 85236443 ~ 85448659 (+)
LOC110515429 LOC106610570 coding upstream 248433 85198005 ~ 85221752 (+)
LOC110517086 LOC106590778 coding upstream 316400 85105137 ~ 85149776 (+)
LOC110516354 LOC106610426 coding upstream 619370 84843532 ~ 84846806 (+)
LOC110513232 LOC106594638 coding downstream 5182 85472163 ~ 85594820 (+)
LOC110510945 LOC106591917 coding downstream 97190 85564171 ~ 85594820 (+)
LOC118966668 LOC106592313 coding downstream 426873 85893094 ~ 85950607 (+)
LOC118936495 LOC106594836 coding downstream 433575 85900556 ~ 85920664 (+)
LOC110516966 LOC106591460 coding downstream 462176 85929157 ~ 85945181 (+)
G931583 NA non-coding upstream 1683 85464170 ~ 85464493 (+)
G931582 NA non-coding upstream 2115 85463667 ~ 85464061 (+)
G931581 NA non-coding upstream 2553 85463266 ~ 85463623 (+)
G931579 NA non-coding upstream 7667 85457984 ~ 85458509 (+)
G931568 NA non-coding upstream 10513 85453907 ~ 85455663 (+)
G931585 NA non-coding downstream 410 85467391 ~ 85471852 (+)
G931586 NA non-coding downstream 1312 85468293 ~ 85468590 (+)
G931599 NA non-coding downstream 31047 85498028 ~ 85499605 (+)
G931574 LOC106591917 non-coding downstream 49617 85516598 ~ 85592174 (+)
G931108 LOC107756720 other upstream 789098 84676559 ~ 84677078 (+)
G930572 LOC106593948 other upstream 1310462 84154939 ~ 84155714 (+)
G931587 NA other downstream 7305 85474286 ~ 85475128 (+)
G931588 NA other downstream 8640 85475621 ~ 85476131 (+)
G931571 LOC106592710 other downstream 56975 85523956 ~ 85594973 (+)

Expression


Co-expression Network