LOC118966668 (LOC106592313)


Basic Information

Item Value
gene id LOC118966668
gene name LOC106592313
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85893094 ~ 85950607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989417.1
ATGACTCAAGACACCAGTTCTAAGAGTGTCCAGAAGCCCAGAGCAGAAACATCTACAACCAGCCTGCTATCAATGAAGAGTGATCAGCCACCTGCTTTCAGCCAGGAACCATTACCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTGAGGATGTATTAAAGATCACACACAACCTTTTGGACATAAGAAGTCAAACTCTGCTGACAGTCCAACAAGACATTAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTTTGTTCAAGGAcatctacacagagctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAATAAACAAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTGCTGACCAAAGGAATCGCTGGTGttggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCATTACTTCCCAGAGCTGAAAGAGATTGACAGCATTGAAGATAGTAAAACCAAAGCTGTTTTCATttttgatggtctggatgagtgtCGACTTCCTCTAGACTTCAAAAACAATGAGAAGTGCTGTGATGTCATGAAGCCAACCTCAGTGGACGTGCTGCTGACAAACCTCATCAAGGGGAATCTGCTTCCCTGTGCGCTCCTCTGGATAACCTCAAGGCCTGCAGCAGCCAATCAGATCCCCCCTGAGTGTGTTGACCAGAtgacagaggtacgagggttcaatgaTCCACAAAAGGAGGAGTATTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAACACATGaagacatcaaggagcctccacatcatTCCCCAAAACTCTGACCCAGATGTACTCACACTTCATTCTCATCCAAACATTGCGAAGAACAAGAAGTACAACAAAGCCACAGAGACAAACCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAGCTGGCTTTCCAACAGCTGCAGAAGGGCAACCTGATCTTCTATGAGGAGGACCTGAGAGAGTGTGGCCTTGATGTCACAGAGGCATCAGAGTACTCAGCATTGTGTACAGAGATCTTTAAAGAAGAATCTGGGCTGTACCAAGAGAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTGGGCAAGGAGGAAAGTGTTTTCCCCCCCAAAGCAGTCACTACTGATGATGAAGAttgtgatgatgaggaggaggaggaagatgatgaggaggaggattatgatgatgacgatgaagaGGAGTCAATCCAGTTGTCTGACTTACACAGGAGAGAAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaatCTGTTACGAGGCCTTCTGACACAGACAGGAAGGACAACACAGACCAATGAGGAAACAGTTGAGAGAACTGTCAGGTACCTTTCATACAAGATCAAGGAGGAATCCTCACCAGAAAGGATCATCAACttgttccactgtctgaatgaacttGGTGCCAACACTCTAGTTGAAGACATGCAGACCTCCCTGCGATCAGGAACTCTTTCAGCAACAAGACTAAAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagTTTGACCTGAAGACATACAACACATCAGAGGAAGGTTATCAGAGGTTGCTGCCAGTAGTGAAAACCTGCAAGAGAGCACTACTGGATGGCTGTAAACTCACATATAAATCCTGTGAGACTCTGACCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAGCTGCAGCTGAGAGACAATGACCTGCAGAACTCAGGAGTTACATTGCTGTCTGCTGAACTGGAGGATCCAGACTGTAAACTAGACACACTGGGgctgtctggctgtctggtcACAGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacctcTCCCACCTGAaagagctggacctgagctacaatcacccaggagTCTCTGCAGGGGGACTGCTTTCAGCTGCTCTGGTGGATCACACATATAAACTGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGCTGAAATCAGGGCCGAGGAAATATGCCTGTTATCTCACCCTGGACCCAAATACAGCACACCCAAACCTGATACTGTCTGAGGGGAACAGGAAGGTGACACAGGTGGTGGAGGACCAGCATTATGAAGACCATCCAGACAGATTGGATCATCCCCAAGTTCTCTGCAGAGAAGGCTTATCTGGAGGTCGTTATtactgggaggtggagagggatggTGACGGGACTTTCATTGGTGTGGCGTACAAAGGAatgaagaggaagggagggaagattGACCGTAGGATTGGACTCAATAGGAAGTCCTGGTGTTTAGTCTGCTATGATAGTGCTTATAACTTTTACCATAATGGAGTCATCAGATACAGTCGACCAGATACTTGTCCTGATTCTGACAGAGTtggagtgtatctggactggccagcTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTACACTGACACACCttcacacagaacacaccacatTCACTGAACCCCTCTATCCTGGGTTTATAATGTACTCCTCCGACTACACCTCATTGACCCTGTGTCCGATAGATGACCAACACATTCAGAGagaccatggtggagagagttggatcaaacctggacctgaggacaccagagaagagttggatcAAGCCTGA
>TU1061788
GAACATatagcgccaatgtaaactgagatttttggatataaatatgaactttgttgaacaaaacatacatgcattgtataacatgaagtcctatgagtgtcatctgatgaagatcatcaaaggttagtgattcatttgatctctttctgctttttgtgactcctctgcTTGGTTaggaaatggctgtgtttttctgtgactaggtgcagacctaatataatcgtttggtgtgctttcgtcttaaagccttttttgaaatcggacactgtggtgggattaacaagttgatctttaaaatggtgtaaaatacttgtatgtctgaggaatttgaattatgagatttctgtttttggtgccctgcactttcactggctgttgtcatatcgatcccgttaacgggatctcagccataagaagCTAATGGTTCTTCAACAATGTTCAGAAATATTAACTGTTCTGCTATTTCTTATTGCAGCTGAGTGAGCTGTGACTTACATCTAAAaccagtctctctggggagagagaggaggggaccactgcctctaaaatgagtctctctggggagagagaagagaccactgcctctaaaatgagtctctctggggagagagaggggaccaccacctctaaaatgagtctctctggggagagagaggaggggaccaccgcctctaaaatgagtctctctggggagagagaagagacaactgcctctaaaatgagtctctctggggagagagaggagaacactgCCTCTAAAATGACTCAAGACACCAGTTCTAAGAGTGTCCAGAAGCCCAGAGCAGAAACATCTACAACCAGCCTGCTATCAATGAAGAGTGATCAGCCACCTGCTTTCAGCCAGGAACCATTACCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTGAGGATGTATTAAAGATCACACACAACCTTTTGGACATAAGAAGTCAAACTCTGCTGACAGTCCAACAAGACATTAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTTTGTTCAAGGAcatctacacagagctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAATAAACAAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTGCTGACCAAAGGAATCGCTGGTGttggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAG

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989417.1 False 3183 mRNA 0.47 11 85893854 85950607
TU1061788 True 1318 TUCP 0.43 3 85893094 85894737

Neighbor

gene id symbol gene type direction distance location
LOC110513232 LOC106594638 coding upstream 299034 85472163 ~ 85594820 (+)
LOC110510945 LOC106591917 coding upstream 299034 85564171 ~ 85594820 (+)
LOC118936854 NA coding upstream 426873 85464789 ~ 85466981 (+)
trnae-cuc-167 NA coding upstream 437359 85456424 ~ 85456495 (+)
LOC110515949 LOC106591060 coding upstream 445195 85236443 ~ 85448659 (+)
LOC110528615 LOC106597603 coding downstream 423 85951030 ~ 85957092 (+)
LOC118966669 LOC106591460 coding downstream 43929 85994536 ~ 86008800 (+)
LOC110528614 LOC106592313 coding downstream 58325 86008932 ~ 86017575 (+)
LOC118936859 LOC106595358 coding downstream 201396 86152003 ~ 86182526 (+)
LOC110513338 LOC106595035 coding downstream 250437 86201044 ~ 86209191 (+)
G931816 NA non-coding upstream 5400 85887755 ~ 85888454 (+)
G931814 NA non-coding upstream 8433 85884502 ~ 85885421 (+)
G931794 NA non-coding upstream 45593 85847794 ~ 85848261 (+)
G931786 NA non-coding upstream 78553 85814991 ~ 85815301 (+)
G931780 NA non-coding upstream 95407 85796556 ~ 85798447 (+)
G931831 NA non-coding downstream 6103 85956710 ~ 86016970 (+)
G931832 NA non-coding downstream 9103 85959710 ~ 86011112 (+)
G931833 LOC106592313 non-coding downstream 13901 85964508 ~ 86028427 (+)
G931836 NA non-coding downstream 19210 85969817 ~ 86030517 (+)
G931837 LOC106594467 non-coding downstream 23696 85974303 ~ 86085007 (+)
G931776 NA other upstream 107356 85785500 ~ 85786498 (+)
G931571 LOC106592710 other upstream 368813 85523956 ~ 85594973 (+)
G931574 LOC106591917 other upstream 374010 85516598 ~ 85592174 (+)
G931588 NA other upstream 417723 85475621 ~ 85476131 (+)
G932184 NA other downstream 492443 86441024 ~ 86475840 (+)
LOC110518842 tbc1d1 other downstream 773330 86704406 ~ 86830606 (+)
LOC118936495 LOC106594836 coding downstream 5819 85900556 ~ 85920664 (+)
LOC110516966 LOC106591460 coding downstream 34420 85929157 ~ 85945181 (+)
G931819 NA non-coding downstream 8534 85903271 ~ 85908183 (+)
G931820 LOC107756720 non-coding downstream 10591 85905328 ~ 85910310 (+)
G931826 NA non-coding downstream 40177 85934914 ~ 85938326 (+)
G931827 NA non-coding downstream 40883 85935620 ~ 85938812 (+)

Expression


Co-expression Network