LOC118966669 (LOC106591460)


Basic Information

Item Value
gene id LOC118966669
gene name LOC106591460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85994536 ~ 86008800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989418.1
TCATTGTTAATGGTTCTTCAATGTTCAGACATACTGTTCTGTTATTTCTTATTGTAGCTGAGTGAGCTGTGACTTACACCTAAAacgagtctctctggggagagaaaggaggagaccactgcctctaaaatgagtctctctggggagagagaggaggagaccactgcctctaaaatgagtctctctggggagagagaggaggagaccactgcctctaaaatgagtctctctggggggagagaggaggggaccacTGCCTCTAAAATGACTCAAGACACCATTTCAAAGAGTGTCCAGAAGCCCAGAGCAGAGTCCCCTACAACCAGCCTGCTATCAATGAAGAGTGATCAGCCACCTGCTTTCAGCCAGGAACCATTGCCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTCAAACTCTGCTGACAGTCCAACAAGACATTAAGGCTAAACTGAAATACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAAGACATCTACACAGAGCTCTATATCACAGAGGGTGGAAGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAAGAAACAAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTGCTGACCAAAGGAAtcgctggcattggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCTCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACTAAAACTGTTTTCATttttgatggtctggatgagtgtCGACTTCCTCTAGACTTCAAAAACAATGAGAAGTGCTGTGATGTCACGAAGCCAACCTCAGTGGACGTGTTGCTGACAAACCTCATCGAGAGGAATCTGCTTCCCTGTGCTCTCCTCTGGATAACCTCACGGCCGGCAGCAGCCAATCAGATCCCTACTGAgtgtgttgaccaggtgacagaggtacgagggttcaatgaTCCACAGAAGGAGGAGTATTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAGCACATGAAGACATCAAGGAGCCTCTACATCATGTGCCACATGCCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATACTGAACGAGGCAGAGAAGGATGAAGTCCCCAAAACTCTGACCCAGATGTACTCACACTTCATTCTCATCCAAATCATTGTGAAGAACAGGAAGTACAACAAAGCCACAGAGACAAACCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAACTGTCTTTCCAACAGCTGCAGAAGGGCAACCTGATCTTCTATGAGGAGGACCTGAGAGAGTGTGGCCTTGATGTCACAGAGGCGTCAGAGTACTCAGCAATGTGTACAGAGATCTTTAAAGAAGAATCTGGGCTGTACCAAGACAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTAGACAAGAAGGAAAGTGTTTTCTCCCCCACGAGTGATGATGAAAAGAATGAGTCAATCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaatCTGTTACGAGGCCTTCTGACACAGACAGGAAGTACAACACAGACCAATGAGGAAACAGTTAAGAGAACAGTCAGGTACCTTTCAGACAACATCAAGGAGGAATCCTCACCAGAAAGGATCATCAACTTGTTCCACTGTTTGAATGAACTTGGTGCCAACTCTCTAGTTGAAGACATGCAGACCTCCCTGCGTTCAGGAACTCTTTCAGAAACAAGACTAAAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagCTTGACCTGAAGACATACAACACAACAAAGGAAGGTTATCAGAGGTTGCTGCCGGTAGTGAAAACCTGCAAGAGAGCACTACTGGATCGCTGTAAACTCACGTATAAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTactAGCTGGCTGTAAAATCACATATGAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACAAACTTCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTactGGATCACTGTGACCTCACATATGAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGAACTCAGCCACAACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAGCTCACAACTGAAACAACTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGTCTTGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAACTGGAGCTGAAAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGtctaggtcagtgtggtctgacagagGGTTGCTGTTCTGATCTGAACTCAGTCCTGAGTTCACCCAACTCACAACTGAAACACCTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGgctgtctggctgtctggtcACAGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagTCTCTGCAGGGGGACTGCTTTCAGCTGCTCTGGTGGATCCCACATGTAAACTGATGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGCTGAAATCAGGGCCGAGGAAATATGCCTGTCATCTCACCTTGGACCCAAGTACAGCAAACCCAGACCTGATACTGTCTGAGGGGAACAGGAAGGTGACACCGGTGGTGGAGGACCAGCATTATGAAGACCATCCAGACAGATTTGACCGTTATCGCCAAGTTCTCTGCAGAGAAGGCTTATCTGATTCTCGTTATTACTGGGAGGTGGACTGGGATGGTGGTGGGCCTGCTATTGGTTTGGTGTACAAAGGAATGTTGGGAAGGGCTGGCATTTGTATTGGACTCACAAGCAATTCCTGGTGTATGTACTGCTCTGACAGCGTTACTGACTTTTACAATGCTGGAGTCCATAGTAGATCCATTCTTAGCCCTGTATCTAGCAGAGTtggagtgtatctggactggccagcTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTGCACTGACACACCTTCACACATTCTACACCACGTTCACTGAACCCCTCTATCCTGGATTTGGGTTTCTTTTGTTGAAAACCTCCTCAGTGACCCTGTATCAGATCAACGACATTCAAAGagaccatggtggagagagttggatcaagcctggacctgaggacaccagagaccatggtggagagagttggatcAAGCCTGGACTTGAGGataccagagaccatggtggagagagttggatcaagcctggacctgaggataccagagaccatggtggagagtgttgtatcaagcctggacctgaggacaccaaagaccatggtggagagagttggataccatggtggggaGAGTTGGATCAAGCCTGGACCTAa

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like isoform X1

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989418.1 True 4275 mRNA 0.49 14 85994536 86008800

Neighbor

gene id symbol gene type direction distance location
LOC110528615 LOC106597603 coding upstream 37444 85951030 ~ 85957092 (+)
LOC118966668 LOC106592313 coding upstream 43929 85893094 ~ 85950607 (+)
LOC110516966 LOC106591460 coding upstream 49355 85929157 ~ 85945181 (+)
LOC118936495 LOC106594836 coding upstream 74137 85900556 ~ 85920664 (+)
LOC110513232 LOC106594638 coding upstream 399716 85472163 ~ 85594820 (+)
LOC110528614 LOC106592313 coding downstream 132 86008932 ~ 86017575 (+)
LOC118936859 LOC106595358 coding downstream 143203 86152003 ~ 86182526 (+)
LOC110513338 LOC106595035 coding downstream 192244 86201044 ~ 86209191 (+)
LOC110514691 uba6 coding downstream 221980 86230780 ~ 86285648 (+)
LOC118936862 NA coding downstream 248457 86257257 ~ 86258475 (+)
G931827 NA non-coding upstream 55724 85935620 ~ 85938812 (+)
G931826 NA non-coding upstream 56210 85934914 ~ 85938326 (+)
G931820 LOC107756720 non-coding upstream 84226 85905328 ~ 85910310 (+)
G931819 NA non-coding upstream 86353 85903271 ~ 85908183 (+)
G931845 NA non-coding downstream 12380 86021180 ~ 86021488 (+)
G931847 NA non-coding downstream 12921 86021721 ~ 86023268 (+)
G931834 NA non-coding downstream 16432 86025232 ~ 86030335 (+)
G931835 NA non-coding downstream 70343 86079143 ~ 86080223 (+)
G931869 NA non-coding downstream 89906 86098706 ~ 86111379 (+)
G931776 NA other upstream 208038 85785500 ~ 85786498 (+)
G931571 LOC106592710 other upstream 469495 85523956 ~ 85594973 (+)
G932184 NA other downstream 434250 86441024 ~ 86475840 (+)
LOC110518842 tbc1d1 other downstream 715137 86704406 ~ 86830606 (+)
LOC110511479 klhl5 other downstream 988986 86997786 ~ 87054035 (+)

Expression


Co-expression Network