LOC110514691 (uba6)


Basic Information

Item Value
gene id LOC110514691
gene name uba6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86230780 ~ 86285648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934367.1
AATAATCTATCAAATAAATATAATTTAAACGTGAACCTTGTCATGTGATCTGGGTAACCCGGAACAGTTTGATGTGTTATTTTTTTAGCTGAACACAACCCTTCATTCGTAACAACAACTCAATGAACCTATCGTACACCGACAGTGCTTCTAGGACCAGTGAGTTTTCCCCTCCCGAGATGTCAGCTGACTCCATGGAGATTGATGACTCCCTGTACAGtcGTCAGAGGTATGTCCTGGGGGACAGTGCTATGCAGCAGATGGCTCAGTCGTCTGTCTTCCTCAGTGGAATGGGAGGACTGGGAGTGGAGATCGCAAAGAACATCGTGTTGGCAGGTGTGAAGgtgttgACGCTGCATGACACTAAGCAGTGTGAGACGTGGGACTTGGGCTCCAACTTCTTCCTCAGACAGGACGATGTGCTGACTCAGAGGAACAGggctTTGGCGGTCCATCCCAGGGTAGCGGAGTTGAACCCTTACGTCCACGTGGAcacgtcctcctcctctctcgacCTCTCCACTGACCTCTGCTTCCTCAAGAGGtaccagTGTGTGATCCTGACTGAGGCCAGGCTGAGTCTCCAGAAGAAAATCAATGACTTCTGTCACTTCCATCAGCCTCCAATCAGGTTCATTGGGTGTGACGCGTATGGGATCTGTGTGAGAGTGTTCTGTGACTTCGGGGACCAGTTTGAGGTGTCGGACCCCACTGGAGAGGAAGCCAAGGAGATGTTTATTCAGAACATCacacagGGTAACCCAGGGGTGGTAACCTGTATGGACAGCAGGACCCACGGCCTCCAGACTGGACAGAGTGTTCTCTTCAGAGAGGTCAACGGCATGGACACCCTCAACGGCACTGCGCGACAGGTCACAGtcctcTCTCCCTACAGTTTCAGCGTAGGGGACACGTCGTGTCTGCAGCCCTATGCACACGGAGGCTTCTTCCTGCCGGTCAAAACCCCCAGAACGTACAGCTTCGAGACGATGGAGCAGCAGCTGTCTGAGCCTCAGGTCCTGACTCCCGACTTCAGCAAACCAGAGGCCCCGCTGCAGATCCACGCCGCCATGCTGGCTCTTGATGCCTTCCAGGAGCAACACAACAGACTGCCCAATATTGGGTGCTGTCAGGATGCGGAGGTTCTGGTCAAACTAACAGAGGAAGTCAACCACACCTTGACAAACAGAgCTCCAGTGAATAGTGAGTTGGTGCGTTGTCTCTCCAGAACGGCGCAGGGTTCTCTCCCTCCATTGGCTGCGGCGGTGGGGGGCATTGCCAGTCAGGAGGTCCTCAAGGCCCTCACGGGGAAGTTTGCCCCACTACAGCAATGGtTCTATCTAGATGCCATAGAGGTAGTGAaaccactactgtctctatcagcAGAGGAGTTTAGCcccaggggtgatCGGTACGACGGACTGAGGGCCTGCATCGGGGAGACCATGTGTCTGGAACTCCACAAGCTGAGAGTCTTTATGGTGGGCTGTGGAGCCATTGGCTGTGAGATGCTCAAGAACTTTGCCCTGCTGGGAGTGGGATTGGCCAAGAGCTCAGGAGAGGTGTGTGTGACGGACCCAGACCTGATAGAGAAGTCCAACCTCAACAGACAGTTCCTCTTCAGATCTCAGCACatacagaaACCTAAGAGCACCACAGCAGTCGTAGCGACCTTGGAGATCAACCCAGAGATGCAGGTAGACGCTCACCTCAACAAGGTGTGTCCTGCCACCGAGGGGGTCTACAACGACCTGTTCTACTCCCGCCTACACCTGGTTGTCACGGCGCTGGACAATGTAGAGGCTCGCAGATACGTCGACAGCCGCAGTGTATCCAATCAGAAGGCTCTTCTGGATTCTGGTACCATGGGAACCAAAGGACACACGGAGATCATCGTGCCCAACCTGACCGAGTCTTACAACAgccatAGGGACCCACCAGAAGAGGAGATTCCGTTCTGCACCCTCAAGTCTTTCCCTGCTGTCATAGAACACACCATCCAATGGGCACGGGACAAGtttgagAGTGCGTTTGCCCACAAGCCCACCATCTATAATATGTTTTGGCAGACCCACTCCTCTGCAGAAGCCGTCCTACAGaggatgCAGCAGAGGGAGACTCTGGAGGGGGCGTTCCAGGTAGTCAAGCTGCTGAGTCGACGGCCCAGCCAATGGGAACACTGTATCATCCTGGCACGCCTCAAATTCGACAAGTACTTCAAGAGAAAGGCTCTACAGCTGCTGCACTCCTTTCCCCTGGACACTCGGTTAAAAGACGGTaGTTTATTCTGGCAGTCACCTAAACGACCCCCGTCTCCCATAGAGTTTGACCTGAAGGACTCACTGCACTTCAGTTTTGTTGTGAGCGCAGCTCGGCTTTATGCTGAAATCTACAACATCCCCTACTCAgagaagGATCTGTCGCAGGAAGCAGTGTCCAGGATGTTGTCAGAGATTACCGTCCCAGAGTACAGGCCAGCAGAGAAGCGTATTGAGACAGATGAGAACGTGAAGAAGCCTGATCAGATGAAGCTGTCTGTAAGcagcgaggaggagagagaggccatCGCCCAGTTAGAGGAGGTTATCACTGCAGGCCACGTtacaccagaGAGGTTACGGATGTCTCCCCAGGTGTTCGAGAAGGACGATGACCTCAACGGCCACATGGACTTCGTGGCGTCGGCCTCCTCCCTCAGGGCCAGGATGTACTCCATCGAGGTGGCCGACCGCCTCAAGACCAAACGCATCGCCGGGAAGATCATCCCCGCCATCGCCACGGCTACCGCCGCCGTCGCCGGGCTGGTGTCGTTGGAGCTGGTGAAGGTGGTGGGAGGATACGGGTTTGAGTCGTTCAACAACTGTTTCTTCAACCTGGCCATTCCTGTCATGGTCCTCACCGAGGCTGCACCTGTCAAGAGAACACAGATCAGGGAAgacatctctttctctatctggGACCGCTGGACTGTGTGGGGTCACcaacacttctccctctctgactTCATCAACGCAGTGTTGgtgaATTATGGGATAGAACCTACCATGGTTGTCCATGGAGTGAAGATGCTCTATGTTCCTGTGATGCCAGGACACAACAAGAGACTGAAACTaacgaTGCAGAAGTTGATCAAACCGTCTGTAGACCGTCGCTATGTTGACCTGACCGTGTCCTTCGCTCCAGAGTCAGATGGTGATGAGGACCTTCCTGGACCCCCCGTTAGGTACTACTTCAGCCCCGACGGAGACGCTCACACCGCCTGACACGCCCGGACCATAACATCCCTGACGCCCCTCAAACTAACCAAATATAACCACCCCTCAGTCCCCTCAAACTAACCCTCTGTACCTGCAAAACCCTAGTTGACAACAGTGGTGCTTCTTGAACAGGGGTGGATTCTAGAGCAGGGGTGGATTCTAGAACAGGGGTGGATTCTAGAACAGGGGTGGATTCTAGAACAGGGGTGGATTCTAGAACAGGGGCGGATTCTAGAACAGGGGCGGATTCTAGAACAGGGGCGGATTCTATAACATATGTTGATTCTAGAACATATGTTGATTCTAGAACATATGGTGATTCTAGAACAGATGGTGATTCTAGAACAGATGGTGATTCTAGAACAGATGGTGATTCTAGAACAGGGCTGGCCCCATGTACCATTATTAGAGAAAGAGCATAGAGGTAGAAAGAGGGCTGTAGATGGATATAACCTGGTCTGATGAGTTCTCTTTCTACCTCTATGAGAAGAGTGAAGCACTTGGCTGTGTACATAGTAGTCCCTTTGTGTTTTCTACTCTGGTATCAAACACAGCTCTGACTGGTGATTTCTACCCTGGTTTAAAACACAGCTCTGACTGGTGTTTTCTACTCTGGTGTAAAGCACAGCTCTGACTGGTGTTTTCTACTCTGGTTTCAAACACAGCTCTGACTTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCTGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCTGACTGGTGTTTTCTACTCTGGTTTAAACACAGCTCTGACTGGTGTTTTCTACTCTGGTTTAAAGCACAGCTCTGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAGCACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAGCACAGCTCTGACTGGTGTTTTCTACTCTGGTTTAAAGCACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCTGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGGTGTTTTCTACTCTGGTTTAAAACACAGCTCAGACTGCTATGCACATACCTTAACTAACAACCTTGTTGTGTTTGTcacgatgacgatgatgatgatgatgctaaaAATAAAAAACGACAGTGTTTAcacacccata

Function

symbol description
uba6 Enables FAT10 activating enzyme activity. Involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Located in cytoplasm.

NR:

description
ubiquitin-like modifier-activating enzyme 6

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10699 UBE1L2, UBA6; ubiquitin-activating enzyme E1-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934367.1 True 4660 mRNA 0.51 33 86230780 86285648

Neighbor

gene id symbol gene type direction distance location
LOC110513338 LOC106595035 coding upstream 21589 86201044 ~ 86209191 (+)
LOC118936859 LOC106595358 coding upstream 48254 86152003 ~ 86182526 (+)
LOC110528614 LOC106592313 coding upstream 213205 86008932 ~ 86017575 (+)
LOC118966669 LOC106591460 coding upstream 221980 85994536 ~ 86008800 (+)
LOC110528615 LOC106597603 coding upstream 273688 85951030 ~ 85957092 (+)
LOC118936863 LOC104951401 coding downstream 1933 86287581 ~ 86323830 (+)
LOC118936864 NA coding downstream 48691 86334061 ~ 86336728 (+)
LOC110514239 LOC106594008 coding downstream 83171 86368819 ~ 86395066 (+)
LOC118936865 NA coding downstream 109545 86395193 ~ 86396534 (+)
LOC118936866 NA coding downstream 119809 86405457 ~ 86409872 (+)
G932013 NA non-coding upstream 13612 86215871 ~ 86217168 (+)
G932034 NA non-coding upstream 38488 86190467 ~ 86192292 (+)
G932027 NA non-coding upstream 77745 86152795 ~ 86153035 (+)
G932026 NA non-coding upstream 78163 86152387 ~ 86152617 (+)
G932056 NA non-coding downstream 5736 86291384 ~ 86293912 (+)
G932061 NA non-coding downstream 28697 86314345 ~ 86314550 (+)
G932062 NA non-coding downstream 29786 86315434 ~ 86315737 (+)
G932063 NA non-coding downstream 46982 86332630 ~ 86333257 (+)
LOC118936495 LOC106594836 other upstream 328168 85900556 ~ 85920664 (+)
LOC118966668 LOC106592313 other upstream 336043 85893094 ~ 85950607 (+)
G932184 NA other downstream 157402 86441024 ~ 86475840 (+)
LOC110518842 tbc1d1 other downstream 438289 86704406 ~ 86830606 (+)
LOC110511479 klhl5 other downstream 712138 86997786 ~ 87054035 (+)
LOC110516832 wdr19 other downstream 833434 87057752 ~ 87129649 (+)
G932422 NA other downstream 909871 87195519 ~ 87288556 (+)

Expression


Co-expression Network