LOC118936497 (lias)


Basic Information

Item Value
gene id LOC118936497
gene name lias
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87391072 ~ 87402637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934406.1
ATGATGGATGCAAAACACTGCGATATATTGATAAATTATACGTCTTTGGTCcccaggggggaaaaaaaacatcgCATTTAGAATAAATCTGTATATAAAAAGAATCGAGATCAATTGATTAATTAAGTAGCGGACGAAATCATTTCTTATTTTCTAAGTTTTATTTTAATACCAGGCCTAAGTACTCGATCCCAGAGAAATGTTTTGTCAATGACAGACGCTAGCAAATGTTAGTTAAAGTCATGGCTTTGGTCAAACAAAGTTATTTTATTGCGGGTCGTTTCTCCAGCAACCACCGGTGGTTGAATCCCAAATGCAACCAACATGTGTACGCCGTCAGCGGACTGACCACAGCGGCCAGGTCATCCCAGACACAGAAGGACCGCAAGAAGGAGCTGTCCGATGACGGGCCCGGCCTCCAGGACTTTATATCCGGGGAGCTGTCTGAGAAGAACAACTGGGAGGAGTACAGGGGTAACCTgaagagacagaagggagagagGCTGAGACTTCCCCCGTGGCTGAAGACTGAGATTCCTATTGGCAAGAACTAcaacaagctgaagaacaccctGAGAGACCTCAACCTGCACACGGTGTGTGAGGAGGCCAGGTGTCCTAACAttggggagtgttggggaggAGGGGAACATGGTACGGCCACAGCTACCATCATGttgatGGGGGACACATGTACCCGTGGCTGTAGGTTCTGTTCTGTGAAGACCGCTCGTCAGCCCTCTCCCCTGGACCCAGATGAGCCCTATAACACAGCCAAGGCCATCGCTGCCTGGGGACTGGACTATGTGGTTCTGACCTCTGTGGACAGAGACGATATCGCTGACGGAGGGGCGGAGCATTTTGCCAAGACCGTCTCCAACCTGAAGGAGAGGAACTCCCAGATCATGGTGGAATGTCTGACCCCTGATTTCCGAGGAGATCTGGCGGCGGTGGAGAAGATCGCCCAATCAGGGCTGGACGTTTACGCCCACAATGTGGAGACCGTCCGCGAGCTGCAGAGACACGTCCGTGATCCGCGGGCGAACATCGACCAATCCCTGAATGTCCTGCGTCACGCCAAGGCCGTCAGACCAGACATTCTCACCAAGACCTCCATCATGTTGGGTCTCGGAGAGACGGACcggcagatctataacacactgactgagcTGAGAGAGGCAGGAGTGGATTGTCTAACACTGGGACAGTACATGCAGCCCACCAAACGCCACCTCAAGgtggagGAGTATGTAACTCCTGAGAGGTTTGGCCACtgggaggaggtggggaaggagaTGGGATTCGTCTACACAGCCAGCGGACCCTTAGTGCGCTCCTCATACAAAGCAGgtgagttCTTCCTGAAGAATCTGTTAGAGAAGAGGAAGGCAGCGGCAGAATAACctgatcacctggactcaccttTACCTGAATCCTGACGTCTCCTCCTTTCagattcctctctccctccataaaGCTACTCTAGATAACACTGTATTACAATATAATATACCACAATAGCTACAATATAAAGTTCTCCAATCCAGAATATGAGCTACTACAGGACTCTGTTCATGTTGATGTCTCGTTCTGTACATTATAACCAGTGATGTCGTGGGGGGTAAATACCTGGGAAGATAAAGGGGGGGTAAATACCTGGGAAGATAAAGGGGGGGGTAAATATCTGGGAATATAAAGGGGGGGTAAATATCTGGGAATATAAAGGGGGGGTAAATATCTGGGAAGATAAAGGGGGGGTAAATACCTGGGAAGATAAAGGGGGGGTCGACCTCCACTCCACCACTGGCTATAGATGTATGATTCATATCAGTCagcaacacacacattcacacagtcaACCTGAGTCGACCAAC

Function

symbol description
lias Predicted to enable lipoate synthase activity. Predicted to be involved in lipoate biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human LIAS (lipoic acid synthetase).

NR:

description
PREDICTED: lipoyl synthase, mitochondrial

GO: NA

KEGG:

id description
K03644 lipA, LIAS, LIP1, LIP5; lipoyl synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934406.1 True 1874 mRNA 0.50 11 87391072 87402637

Neighbor

gene id symbol gene type direction distance location
LOC110516832 wdr19 coding upstream 261423 87057752 ~ 87129649 (+)
LOC110511479 klhl5 coding upstream 337700 86997786 ~ 87054035 (+)
LOC110512499 LOC106594418 coding upstream 452041 86920572 ~ 86939031 (+)
LOC118936872 LOC106593007 coding upstream 474153 86882352 ~ 86916919 (+)
LOC110518842 tbc1d1 coding upstream 560466 86704406 ~ 86830606 (+)
LOC118936875 LOC105009164 coding downstream 52427 87454878 ~ 87471566 (+)
LOC110519305 NA coding downstream 171030 87573667 ~ 87623897 (+)
LOC118936877 rhoh coding downstream 227294 87629931 ~ 87655775 (+)
nachra9 nachra9 coding downstream 272440 87675077 ~ 87696588 (+)
LOC118966670 NA coding downstream 303354 87705991 ~ 87756519 (+)
G932466 NA non-coding upstream 1241 87379860 ~ 87390230 (+)
G932462 rfc1 non-coding upstream 22436 87368102 ~ 87368636 (+)
G932422 NA non-coding upstream 102516 87195519 ~ 87288556 (+)
G932446 NA non-coding upstream 130289 87259979 ~ 87260783 (+)
G932438 NA non-coding upstream 133205 87254493 ~ 87257867 (+)
G932484 NA non-coding downstream 2150 87404787 ~ 87406846 (+)
G932467 NA non-coding downstream 36726 87439363 ~ 87440003 (+)
G932506 NA non-coding downstream 59732 87462369 ~ 87463868 (+)
G932507 NA non-coding downstream 60497 87463134 ~ 87464648 (+)
G932526 pds5a other downstream 111308 87513945 ~ 87531331 (+)

Expression


Co-expression Network