G844685


Basic Information

Item Value
gene id G844685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 589604 ~ 596700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU961892
ccccctgcatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgcaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccttaaTACCCttttatatagtctccacattgactctgtaccggtgccccctgcatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccataatatcctgtatatagcctccacattgactctgtaccttaaTACCCttttatatagtctccacattgactctgtaccggtactccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctcctcattgactctgtaccgtaaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctcctcattgactctgtaccgtaaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctacacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtcccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctacacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactgtaatcccctgtatatagcctccacattgactctgtacagtaataccctgtatatagcctccacattgactctgtacagtaataccctgtatatagcctccacattgactctgtacagtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtgtatagcctccacattgactctgtacagtaacaccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtacagtaataccctgtatatagccctccacattgactctgtacagtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtacagtaataccctgtatatagcctccacattgactctgtacagtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccataatatcctgtatatagcctccacattgactctgtaccttaaTACCCttttatatagtctccacattgactctgtaccggtactccctgtatatagcctccacattgactctgtaccgtaatatcctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctcctcattgactctgtaccgtaaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctcctcattgactctgtaccgtaaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctacacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtcccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctacacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataacctgtatatagcctccacattgactctgtaccgtaataacctgtatatagcctccacattgactctgtactggtaccccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtgccgtaataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataacctgtatatagcctccacattgactctgtaccgtaataacctgtatatagcctccacattgactcagtactggtaccccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccataatatactgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtgccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatattgcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU961892 True 3351 lncRNA 0.45 2 589604 596700

Neighbor

gene id symbol gene type direction distance location
LOC110533228 LOC106604062 coding downstream 378199 131144 ~ 211405 (-)
LOC118966673 NA coding downstream 400321 185389 ~ 189283 (-)
rpl23a rpl23a coding downstream 461897 120264 ~ 127707 (-)
LOC110533227 LOC105006947 coding downstream 471190 99960 ~ 118414 (-)
LOC110533226 LOC107554284 coding downstream 491876 92131 ~ 97728 (-)
LOC110533253 bach1 coding upstream 9694 606394 ~ 613031 (-)
sodc sodc coding upstream 20777 617477 ~ 624914 (-)
mis18a LOC106604044 coding upstream 100830 697530 ~ 725493 (-)
LOC110534824 LOC106604036 coding upstream 196250 792950 ~ 823863 (-)
LOC118966676 NA coding upstream 282947 879647 ~ 885369 (-)
G844679 NA non-coding downstream 24854 563909 ~ 564750 (-)
G844658 NA non-coding downstream 70201 518217 ~ 519403 (-)
G844657 NA non-coding downstream 74840 514269 ~ 514764 (-)
G844655 NA non-coding downstream 77014 511849 ~ 512590 (-)
G844623 NA non-coding downstream 134314 453561 ~ 455290 (-)
G844662 NA non-coding upstream 7372 604072 ~ 604817 (-)
G844695 NA non-coding upstream 30848 627548 ~ 627824 (-)
G844703 NA non-coding upstream 44697 641397 ~ 642242 (-)
G844705 NA non-coding upstream 51694 648394 ~ 651766 (-)
G844720 NA non-coding upstream 86311 683011 ~ 684319 (-)
G844686 NA other downstream 15666 571525 ~ 573938 (-)
heatr6 heatr6 other downstream 524904 44407 ~ 91388 (-)
G844794 NA other upstream 185324 782024 ~ 782738 (-)
G844847 NA other upstream 247973 844673 ~ 846752 (-)
G844866 LOC106591684 other upstream 287460 884160 ~ 890758 (-)
G844975 NA other upstream 428954 1025654 ~ 1027442 (-)
G844976 NA other upstream 431440 1028140 ~ 1029996 (-)

Expression

G844685 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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G844685 Expression in each Bioproject

Bar chart with 20 bars.
G844685 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network